Variant report
| Variant | rs954416 |
|---|---|
| Chromosome Location | chr4:81760308-81760309 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1027294 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1027295 | 1.00[JPT][hapmap] |
| rs10516649 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs11099448 | 0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12233641 | 0.93[ASN][1000 genomes] |
| rs12233814 | 0.93[ASN][1000 genomes] |
| rs12648780 | 0.98[ASN][1000 genomes] |
| rs12648781 | 0.98[ASN][1000 genomes] |
| rs13102852 | 0.93[ASN][1000 genomes] |
| rs13108385 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13119650 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs13129485 | 1.00[JPT][hapmap] |
| rs34269465 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34620960 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs35093266 | 0.83[EUR][1000 genomes] |
| rs35227775 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35336312 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35443534 | 0.93[ASN][1000 genomes] |
| rs35663002 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs36002245 | 0.93[ASN][1000 genomes] |
| rs36087364 | 0.82[ASN][1000 genomes] |
| rs71596035 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002776 | chr4:81480374-81802614 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv537154 | chr4:81480374-81802614 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3518601 | chr4:81523238-81831941 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3518602 | chr4:81523354-81831976 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:81753400-81761800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
