Variant report

Variant	rs955193
Chromosome Location	chr9:15788170-15788171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10217374	0.91[AMR][1000 genomes]
rs1039815	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1039816	0.91[AMR][1000 genomes]
rs10429512	1.00[ASW][hapmap];0.83[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10732334	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10756702	0.90[AFR][1000 genomes]
rs10756706	0.81[EUR][1000 genomes]
rs10810445	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810447	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1081247	1.00[YRI][hapmap]
rs1341739	1.00[YRI][hapmap]
rs1355172	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1417974	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1417975	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1417976	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1472941	1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs1553727	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1891208	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1935225	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1964706	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1970496	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2055774	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2096119	1.00[YRI][hapmap]
rs2136354	0.83[AMR][1000 genomes]
rs2136357	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2153724	1.00[YRI][hapmap]
rs2185664	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2382533	0.83[AMR][1000 genomes]
rs2382535	0.83[AMR][1000 genomes]
rs2382536	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs276434	0.83[GIH][hapmap]
rs276437	1.00[YRI][hapmap]
rs3122705	1.00[ASW][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4146289	0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4146292	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4740623	0.91[AMR][1000 genomes]
rs4741536	0.91[AMR][1000 genomes]
rs4741537	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs4741540	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4741544	1.00[YRI][hapmap]
rs6474941	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6474949	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6474956	0.83[AMR][1000 genomes]
rs6474957	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs6474961	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474967	0.86[LWK][hapmap]
rs6474973	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6474977	0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7025247	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7035422	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7038920	0.91[AMR][1000 genomes]
rs7468716	0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs770203	1.00[YRI][hapmap]
rs770206	1.00[YRI][hapmap]
rs7865193	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7865391	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7866413	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7870315	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7874094	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs954932	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs958870	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9919009	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
3	chr9:15779000-15791200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:15781200-15790800	Weak transcription	Fetal Thymus	thymus
5	chr9:15783200-15788600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:15783600-15802000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15784600-15790200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:15785000-15808600	Weak transcription	Aorta	Aorta
9	chr9:15786200-15789200	Weak transcription	Psoas Muscle	Psoas
10	chr9:15786600-15789600	Weak transcription	Ovary	ovary
11	chr9:15787000-15790600	Weak transcription	Left Ventricle	heart
12	chr9:15787000-15791200	Weak transcription	Esophagus	oesophagus
13	chr9:15787200-15796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:15787200-15799600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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