Variant report

Variant	rs9555927
Chromosome Location	chr13:87249965-87249966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:87248984..87251964-chr17:56706206..56708752,2	K562	blood:
2	chr13:87248984..87250484-chr17:56706669..56710573,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs11839712	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842820	0.99[ASN][1000 genomes]
rs12428630	0.89[ASN][1000 genomes]
rs12428639	0.89[ASN][1000 genomes]
rs12429018	0.89[ASN][1000 genomes]
rs12429024	0.89[ASN][1000 genomes]
rs12429266	0.89[ASN][1000 genomes]
rs12429289	0.89[ASN][1000 genomes]
rs12430190	0.85[JPT][hapmap]
rs1328842	0.99[ASN][1000 genomes]
rs1328850	0.94[ASN][1000 genomes]
rs1343557	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2341301	0.99[ASN][1000 genomes]
rs2341302	0.99[ASN][1000 genomes]
rs2987537	0.93[ASN][1000 genomes]
rs2996395	0.88[EUR][1000 genomes]
rs2996405	0.85[EUR][1000 genomes]
rs2996411	0.82[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2996414	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3015518	0.93[JPT][hapmap]
rs3015520	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs3015530	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34674025	0.89[ASN][1000 genomes]
rs4771780	0.99[ASN][1000 genomes]
rs4771781	0.97[ASN][1000 genomes]
rs4771782	0.99[ASN][1000 genomes]
rs4773429	0.99[ASN][1000 genomes]
rs4773430	0.99[ASN][1000 genomes]
rs4773431	0.99[ASN][1000 genomes]
rs4773433	0.99[ASN][1000 genomes]
rs4773440	0.89[ASN][1000 genomes]
rs4773441	0.89[ASN][1000 genomes]
rs4773445	0.89[ASN][1000 genomes]
rs4773447	0.89[ASN][1000 genomes]
rs4773449	0.89[ASN][1000 genomes]
rs4773460	0.89[ASN][1000 genomes]
rs4773461	0.89[ASN][1000 genomes]
rs56670140	0.99[ASN][1000 genomes]
rs57048551	0.89[ASN][1000 genomes]
rs61969744	0.99[ASN][1000 genomes]
rs61969761	0.89[ASN][1000 genomes]
rs61969762	0.89[ASN][1000 genomes]
rs61969763	0.89[ASN][1000 genomes]
rs61969764	0.89[ASN][1000 genomes]
rs61969767	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492430	0.99[ASN][1000 genomes]
rs7318402	0.99[ASN][1000 genomes]
rs7323420	0.99[ASN][1000 genomes]
rs7324144	0.89[ASN][1000 genomes]
rs7324246	0.87[ASN][1000 genomes]
rs7326575	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326677	0.99[ASN][1000 genomes]
rs7327390	0.89[ASN][1000 genomes]
rs7329239	0.89[ASN][1000 genomes]
rs7332515	0.89[ASN][1000 genomes]
rs7333049	0.89[ASN][1000 genomes]
rs7335219	0.99[ASN][1000 genomes]
rs7335618	0.99[ASN][1000 genomes]
rs7336328	0.97[ASN][1000 genomes]
rs7336664	0.89[ASN][1000 genomes]
rs7984982	0.89[ASN][1000 genomes]
rs7985750	0.99[ASN][1000 genomes]
rs7986902	0.89[ASN][1000 genomes]
rs7988119	0.89[ASN][1000 genomes]
rs7988291	0.99[ASN][1000 genomes]
rs7988492	0.97[ASN][1000 genomes]
rs7991309	0.89[ASN][1000 genomes]
rs7994171	0.89[ASN][1000 genomes]
rs7996543	0.89[ASN][1000 genomes]
rs7997121	0.89[ASN][1000 genomes]
rs8001354	0.96[ASN][1000 genomes]
rs8001904	0.89[ASN][1000 genomes]
rs8002579	0.99[ASN][1000 genomes]
rs9301557	0.99[ASN][1000 genomes]
rs9301558	0.99[ASN][1000 genomes]
rs9301559	0.99[ASN][1000 genomes]
rs9555868	0.99[ASN][1000 genomes]
rs9555869	0.99[ASN][1000 genomes]
rs9555870	0.84[ASN][1000 genomes]
rs9555881	0.99[ASN][1000 genomes]
rs9555907	0.89[ASN][1000 genomes]
rs9560214	0.99[ASN][1000 genomes]
rs9560272	0.99[ASN][1000 genomes]
rs9560276	0.99[ASN][1000 genomes]
rs9560277	0.96[ASN][1000 genomes]
rs9560278	0.97[ASN][1000 genomes]
rs9560283	0.99[ASN][1000 genomes]
rs9560287	0.99[ASN][1000 genomes]
rs9560292	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9560305	0.99[ASN][1000 genomes]
rs9560310	0.99[ASN][1000 genomes]
rs9560312	0.99[ASN][1000 genomes]
rs9560368	0.89[ASN][1000 genomes]
rs9560369	0.89[ASN][1000 genomes]
rs9560370	0.89[ASN][1000 genomes]
rs9560372	0.89[ASN][1000 genomes]
rs9560376	0.89[ASN][1000 genomes]
rs9560381	0.89[ASN][1000 genomes]
rs9560385	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047136	chr13:86979109-87555131	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900762	chr13:87073397-87353400	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900763	chr13:87073397-87658986	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1047134	chr13:87094248-87356929	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv562618	chr13:87110325-87364635	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv456055	chr13:87140651-87311967	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv562620	chr13:87140651-87311967	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv900773	chr13:87159109-87463100	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv900774	chr13:87182669-87263073	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1038179	chr13:87199973-87391741	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv562622	chr13:87204838-87338840	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1047366	chr13:87206054-87320456	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv456056	chr13:87208617-87287618	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv562623	chr13:87208617-87287618	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv974226	chr13:87222447-87250468	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	esv3368569	chr13:87223000-87253908	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv3410385	chr13:87232000-87254629	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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