Variant report

Variant	rs9556491
Chromosome Location	chr13:96258386-96258387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96256829..96259595-chr13:96329198..96332002,2	MCF-7	breast:
2	chr13:96256070..96258661-chr13:96261703..96264658,2	K562	blood:

Variant related genes	Relation type
ENSG00000102580	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12583374	1.00[AFR][1000 genomes]
rs1467648	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3759446	0.85[CEU][hapmap]
rs3848075	0.85[CEU][hapmap]
rs4536336	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4773918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492811	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6492813	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7325366	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7350684	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561919	1.00[CEU][hapmap]
rs9561921	0.85[CEU][hapmap]
rs9561933	0.85[CEU][hapmap]
rs9561938	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
3	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:96238200-96261000	Weak transcription	Spleen	Spleen
5	chr13:96239800-96259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:96240000-96261200	Weak transcription	Colon Smooth Muscle	Colon
7	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:96241200-96260800	Weak transcription	Fetal Heart	heart
10	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
11	chr13:96246400-96278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr13:96247200-96259600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:96247200-96267000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:96247800-96261200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:96248000-96276600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:96249000-96264800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr13:96249400-96272200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:96252000-96259000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:96252200-96258400	Strong transcription	Fetal Stomach	stomach
22	chr13:96252800-96260000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr13:96253400-96259000	Strong transcription	NHLF	lung
24	chr13:96253400-96264800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr13:96253600-96263200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr13:96254000-96261000	Weak transcription	Right Atrium	heart
27	chr13:96254200-96265000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr13:96254400-96258800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr13:96254600-96258800	Strong transcription	Fetal Muscle Trunk	muscle
30	chr13:96254800-96263000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr13:96255000-96258800	Strong transcription	Fetal Muscle Leg	muscle
32	chr13:96255000-96262600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr13:96255000-96262600	Weak transcription	Brain Anterior Caudate	brain
34	chr13:96255000-96273000	Weak transcription	Brain Hippocampus Middle	brain
35	chr13:96255200-96261000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr13:96255200-96261000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr13:96255200-96262800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:96255400-96260800	Weak transcription	Fetal Kidney	kidney
39	chr13:96255800-96259800	Enhancers	Stomach Mucosa	stomach
40	chr13:96256200-96262200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr13:96256800-96259000	Strong transcription	HSMM	muscle
43	chr13:96256800-96259200	Weak transcription	NHEK	skin
44	chr13:96256800-96260000	Weak transcription	HSMMtube	muscle
45	chr13:96256800-96260800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr13:96256800-96261000	Weak transcription	Left Ventricle	heart
47	chr13:96256800-96261000	Weak transcription	Pancreas	Pancrea
48	chr13:96256800-96262800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr13:96256800-96270200	Weak transcription	Aorta	Aorta
50	chr13:96256800-96273000	Weak transcription	Gastric	stomach

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