Variant report

Variant	rs9556499
Chromosome Location	chr13:96453602-96453603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:96447571..96450064-chr13:96451642..96454530,2	K562	blood:
2	chr13:96349364..96351436-chr13:96453335..96455358,2	MCF-7	breast:
3	chr13:96452236..96454277-chr13:96468107..96470633,2	K562	blood:
4	chr13:96451195..96454586-chr13:96458825..96461447,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3213931	0.89[ASN][1000 genomes]
rs45595741	0.86[ASN][1000 genomes]
rs9561965	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561968	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96405600-96455800	Weak transcription	Fetal Heart	heart
2	chr13:96430000-96457400	Weak transcription	Brain Germinal Matrix	brain
3	chr13:96439800-96454200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:96443800-96465600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:96443800-96466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:96444400-96461600	Weak transcription	Esophagus	oesophagus
7	chr13:96444400-96461800	Weak transcription	Ovary	ovary
8	chr13:96444400-96477600	Weak transcription	Brain Angular Gyrus	brain
9	chr13:96444400-96477600	Weak transcription	NHLF	lung
10	chr13:96444400-96485600	Weak transcription	NHDF-Ad	bronchial
11	chr13:96445000-96455800	Weak transcription	HMEC	breast
12	chr13:96445000-96458400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr13:96445600-96454800	Weak transcription	Lung	lung
14	chr13:96445600-96461600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr13:96445600-96461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:96445600-96461800	Weak transcription	Pancreas	Pancrea
17	chr13:96445600-96477400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr13:96445800-96453800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr13:96445800-96455400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:96445800-96461600	Weak transcription	Aorta	Aorta
21	chr13:96445800-96490000	Weak transcription	HepG2	liver
22	chr13:96446000-96455600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:96446000-96457400	Weak transcription	Fetal Intestine Small	intestine
24	chr13:96446200-96456600	Weak transcription	Fetal Muscle Leg	muscle
25	chr13:96446200-96461600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr13:96446200-96461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr13:96446200-96477400	Weak transcription	Gastric	stomach
28	chr13:96446400-96464800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr13:96446400-96466000	Weak transcription	NHEK	skin
30	chr13:96446800-96454400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr13:96446800-96455600	Weak transcription	HUVEC	blood vessel
32	chr13:96446800-96457200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr13:96446800-96477400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr13:96446800-96477400	Weak transcription	HSMMtube	muscle
35	chr13:96447000-96461600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr13:96447200-96477400	Weak transcription	Osteobl	bone
37	chr13:96447600-96454400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr13:96448600-96455600	Weak transcription	Left Ventricle	heart
39	chr13:96448800-96457000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr13:96448800-96458400	Weak transcription	Liver	Liver
41	chr13:96449000-96462400	Weak transcription	Hela-S3	cervix
42	chr13:96449000-96464800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr13:96449800-96458400	Weak transcription	NH-A	brain
44	chr13:96450200-96454800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr13:96450200-96461600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr13:96450600-96455800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr13:96451200-96454000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:96451800-96458400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr13:96452000-96458400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney

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