Variant report

Variant	rs9560701
Chromosome Location	chr13:91495771-91495772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10507985	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11842287	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16944850	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16944857	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17635954	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4372571	0.84[AMR][1000 genomes]
rs7984080	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7997511	0.81[EUR][1000 genomes]
rs9556049	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9560705	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9560706	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9560712	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9560715	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044540	chr13:90509098-91497974	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv541870	chr13:90509098-91497974	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1043569	chr13:91016376-91554546	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91483200-91497600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:91487200-91503200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:91490200-91497000	Weak transcription	Right Atrium	heart
4	chr13:91492400-91501800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:91493400-91498400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:91494200-91497400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:91494600-91496000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr13:91494800-91497200	Weak transcription	Hela-S3	cervix
9	chr13:91495400-91497200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr13:91495600-91496200	Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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