Variant report

Variant	rs9561900
Chromosome Location	chr13:96199162-96199163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11070136	0.96[CEU][hapmap]
rs1325774	0.92[CEU][hapmap]
rs17189824	0.83[JPT][hapmap]
rs17268561	0.92[CEU][hapmap]
rs2031540	0.96[CEU][hapmap]
rs6492815	0.83[JPT][hapmap]
rs7319952	0.96[CEU][hapmap]
rs7324781	0.83[JPT][hapmap]
rs7325180	0.92[CEU][hapmap]
rs7328652	0.92[CEU][hapmap]
rs7333332	0.83[JPT][hapmap]
rs7337105	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302081	0.92[CEU][hapmap]
rs9590303	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96188000-96199600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:96194200-96199600	Weak transcription	A549	lung
3	chr13:96194600-96204200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:96194600-96204200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:96198800-96200000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:96198800-96200400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:96198800-96200400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:96198800-96200400	Enhancers	Hela-S3	cervix
9	chr13:96198800-96200600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:96199000-96199200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:96199000-96200000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr13:96199000-96200200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:96199000-96200600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr13:96199000-96200600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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