Variant report

Variant	rs9561920
Chromosome Location	chr13:96292616-96292617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17235334	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3742151	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3759446	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3848075	0.85[CEU][hapmap]
rs7321311	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9561918	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9561919	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561921	0.85[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561922	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561933	0.85[CEU][hapmap]
rs9561938	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3330095	chr13:96281000-96297421	Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:96256800-96294200	Weak transcription	Placenta	Placenta
5	chr13:96260200-96293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:96265800-96293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:96267600-96293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:96270200-96293400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:96273600-96293400	Weak transcription	Brain Substantia Nigra	brain
10	chr13:96273600-96293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:96273600-96293600	Weak transcription	Left Ventricle	heart
12	chr13:96273800-96293600	Weak transcription	Gastric	stomach
13	chr13:96273800-96293600	Weak transcription	Pancreas	Pancrea
14	chr13:96276800-96293400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr13:96279200-96293800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr13:96279400-96293800	Weak transcription	Liver	Liver
17	chr13:96283800-96293600	Weak transcription	Fetal Heart	heart
18	chr13:96284400-96293400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr13:96284600-96293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:96284600-96295800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr13:96284800-96293600	Weak transcription	Spleen	Spleen
22	chr13:96285200-96293600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr13:96285400-96293400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr13:96285400-96293600	Weak transcription	Brain Hippocampus Middle	brain
25	chr13:96285600-96293400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:96285600-96293400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:96285600-96293400	Weak transcription	Brain Angular Gyrus	brain
28	chr13:96285600-96293600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr13:96285800-96293400	Weak transcription	Colon Smooth Muscle	Colon
30	chr13:96285800-96293800	Weak transcription	Aorta	Aorta
31	chr13:96286200-96293000	Weak transcription	Brain Germinal Matrix	brain
32	chr13:96286600-96293200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr13:96286600-96293800	Weak transcription	Psoas Muscle	Psoas
34	chr13:96286800-96293400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr13:96287800-96292800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:96288200-96293000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:96288800-96293600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr13:96289400-96293400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr13:96289800-96293600	Weak transcription	HMEC	breast
40	chr13:96290000-96293000	Weak transcription	Fetal Brain Female	brain
41	chr13:96290000-96293400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr13:96290000-96293600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr13:96291000-96293400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr13:96291000-96293600	Strong transcription	HSMM	muscle
45	chr13:96291000-96293800	Strong transcription	A549	lung
46	chr13:96291200-96293400	Strong transcription	Fetal Muscle Leg	muscle
47	chr13:96291400-96293400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr13:96291400-96293400	Weak transcription	Fetal Brain Male	brain
49	chr13:96291400-96293400	Weak transcription	Ovary	ovary
50	chr13:96291400-96293400	Weak transcription	HSMMtube	muscle

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