Variant report

Variant	rs9561922
Chromosome Location	chr13:96303474-96303475
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12583374	0.83[EUR][1000 genomes]
rs12585001	0.83[EUR][1000 genomes]
rs17235334	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17882362	0.81[EUR][1000 genomes]
rs3742151	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3759446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3848075	1.00[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs4536336	0.82[CEU][hapmap]
rs4773918	0.85[CEU][hapmap]
rs58498169	0.81[EUR][1000 genomes]
rs60253451	0.83[EUR][1000 genomes]
rs6492811	0.82[CEU][hapmap]
rs72632666	0.83[EUR][1000 genomes]
rs72632667	0.81[EUR][1000 genomes]
rs7321311	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556491	0.85[CEU][hapmap]
rs9556493	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9556494	0.81[EUR][1000 genomes]
rs9561918	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9561919	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561920	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561921	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9561933	1.00[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs9561938	1.00[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs9669929	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96302400-96303600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:96302400-96303800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr13:96303200-96303800	Enhancers	Primary neutrophils fromperipheralblood	blood

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