Variant report

Variant	rs9561952
Chromosome Location	chr13:96427626-96427627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96295663..96297429-chr13:96426434..96428340,2	K562	blood:

Variant related genes	Relation type
ENSG00000134874	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12583253	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583374	0.81[ASN][1000 genomes]
rs12585001	0.81[ASN][1000 genomes]
rs12585954	0.83[ASN][1000 genomes]
rs17881101	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17882362	0.84[ASN][1000 genomes]
rs2026817	0.85[AFR][1000 genomes]
rs2289812	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289813	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3099358	1.00[YRI][hapmap]
rs3848075	1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs58498169	0.84[ASN][1000 genomes]
rs60253451	0.82[ASN][1000 genomes]
rs72632666	0.82[ASN][1000 genomes]
rs72632667	0.84[ASN][1000 genomes]
rs72632670	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs72632671	0.92[EUR][1000 genomes]
rs7335888	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7336750	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9556494	0.82[ASN][1000 genomes]
rs9556498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561925	0.86[JPT][hapmap]
rs9561933	1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs9561938	1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs9561944	0.88[ASN][1000 genomes]
rs9561950	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561954	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561958	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561966	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9561970	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9561994	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes]
rs9561997	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes]
rs9669929	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96367600-96436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr13:96367800-96430200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:96387000-96428800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr13:96394000-96435800	Weak transcription	A549	lung
5	chr13:96394400-96438400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr13:96394600-96435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:96398400-96436200	Weak transcription	Colon Smooth Muscle	Colon
8	chr13:96398400-96439400	Weak transcription	Brain Hippocampus Middle	brain
9	chr13:96404000-96433200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:96404000-96439400	Weak transcription	Thymus	Thymus
11	chr13:96405400-96436800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:96405400-96439400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:96405400-96452600	Weak transcription	Psoas Muscle	Psoas
14	chr13:96405600-96455800	Weak transcription	Fetal Heart	heart
15	chr13:96406600-96435800	Weak transcription	Gastric	stomach
16	chr13:96406600-96436000	Weak transcription	NHLF	lung
17	chr13:96406800-96435800	Weak transcription	Pancreas	Pancrea
18	chr13:96407000-96433400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr13:96407200-96439400	Weak transcription	Brain Anterior Caudate	brain
20	chr13:96408400-96443600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr13:96408600-96430200	Weak transcription	Hela-S3	cervix
22	chr13:96408600-96443200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr13:96408600-96445400	Weak transcription	K562	blood
24	chr13:96409800-96434200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr13:96410400-96436200	Weak transcription	Aorta	Aorta
26	chr13:96411400-96439400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:96412000-96443400	Weak transcription	Colonic Mucosa	Colon
28	chr13:96413200-96439800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr13:96414000-96432400	Weak transcription	Ovary	ovary
30	chr13:96414000-96435800	Weak transcription	Right Ventricle	heart
31	chr13:96414000-96436600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr13:96414000-96443400	Weak transcription	Brain Angular Gyrus	brain
33	chr13:96414400-96443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:96414600-96433400	Weak transcription	Spleen	Spleen
35	chr13:96415600-96439400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr13:96416200-96429200	Weak transcription	Fetal Muscle Leg	muscle
37	chr13:96416200-96433200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr13:96416200-96433600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr13:96416200-96436400	Weak transcription	HSMMtube	muscle
40	chr13:96416200-96439200	Weak transcription	Brain Substantia Nigra	brain
41	chr13:96416200-96439200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr13:96416200-96443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr13:96416200-96445400	Weak transcription	Fetal Kidney	kidney
44	chr13:96416400-96428200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr13:96416400-96429000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr13:96416400-96432200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr13:96416400-96432200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr13:96416400-96440000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr13:96416400-96440200	Weak transcription	HepG2	liver
50	chr13:96416800-96436200	Weak transcription	Placenta	Placenta

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