Variant report

Variant	rs9561953
Chromosome Location	chr13:96428973-96428974
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11070154	0.82[CEU][hapmap]
rs11616456	0.84[CEU][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11839843	0.80[EUR][1000 genomes]
rs12583795	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12583796	0.92[CEU][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12858210	0.81[CEU][hapmap]
rs2389372	0.84[AFR][1000 genomes]
rs3901894	0.92[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs4773928	0.81[CEU][hapmap]
rs6492821	0.92[CEU][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6492824	0.82[CEU][hapmap]
rs7323150	0.84[CEU][hapmap]
rs7327549	0.81[AFR][1000 genomes]
rs7334552	0.92[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs7338266	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs7981593	0.84[AFR][1000 genomes]
rs7981923	0.82[CEU][hapmap]
rs7995306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9302084	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9556503	0.82[CEU][hapmap]
rs9561925	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9561931	0.81[CEU][hapmap]
rs9561935	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561936	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9561939	0.92[CEU][hapmap]
rs9561963	0.81[EUR][1000 genomes]
rs9561964	0.84[CEU][hapmap]
rs9561967	0.82[CEU][hapmap]
rs9561969	0.82[CEU][hapmap]
rs9561995	0.80[CEU][hapmap]
rs9590318	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96367600-96436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr13:96367800-96430200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:96394000-96435800	Weak transcription	A549	lung
4	chr13:96394400-96438400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr13:96394600-96435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:96398400-96436200	Weak transcription	Colon Smooth Muscle	Colon
7	chr13:96398400-96439400	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:96404000-96433200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:96404000-96439400	Weak transcription	Thymus	Thymus
10	chr13:96405400-96436800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr13:96405400-96439400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr13:96405400-96452600	Weak transcription	Psoas Muscle	Psoas
13	chr13:96405600-96455800	Weak transcription	Fetal Heart	heart
14	chr13:96406600-96435800	Weak transcription	Gastric	stomach
15	chr13:96406600-96436000	Weak transcription	NHLF	lung
16	chr13:96406800-96435800	Weak transcription	Pancreas	Pancrea
17	chr13:96407000-96433400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:96407200-96439400	Weak transcription	Brain Anterior Caudate	brain
19	chr13:96408400-96443600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:96408600-96430200	Weak transcription	Hela-S3	cervix
21	chr13:96408600-96443200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr13:96408600-96445400	Weak transcription	K562	blood
23	chr13:96409800-96434200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr13:96410400-96436200	Weak transcription	Aorta	Aorta
25	chr13:96411400-96439400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:96412000-96443400	Weak transcription	Colonic Mucosa	Colon
27	chr13:96413200-96439800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr13:96414000-96432400	Weak transcription	Ovary	ovary
29	chr13:96414000-96435800	Weak transcription	Right Ventricle	heart
30	chr13:96414000-96436600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr13:96414000-96443400	Weak transcription	Brain Angular Gyrus	brain
32	chr13:96414400-96443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr13:96414600-96433400	Weak transcription	Spleen	Spleen
34	chr13:96415600-96439400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr13:96416200-96429200	Weak transcription	Fetal Muscle Leg	muscle
36	chr13:96416200-96433200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr13:96416200-96433600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr13:96416200-96436400	Weak transcription	HSMMtube	muscle
39	chr13:96416200-96439200	Weak transcription	Brain Substantia Nigra	brain
40	chr13:96416200-96439200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr13:96416200-96443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr13:96416200-96445400	Weak transcription	Fetal Kidney	kidney
43	chr13:96416400-96429000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr13:96416400-96432200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr13:96416400-96432200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr13:96416400-96440000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr13:96416400-96440200	Weak transcription	HepG2	liver
48	chr13:96416800-96436200	Weak transcription	Placenta	Placenta
49	chr13:96417600-96430400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr13:96417600-96435800	Weak transcription	HUVEC	blood vessel

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