Variant report

Variant	rs9561965
Chromosome Location	chr13:96499573-96499574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3213931	0.84[CHB][hapmap];0.88[GIH][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3848078	0.85[CHB][hapmap]
rs4550324	0.85[YRI][hapmap]
rs45595741	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7318577	0.82[YRI][hapmap]
rs9302086	0.84[CHB][hapmap]
rs9556499	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561948	0.84[CHB][hapmap]
rs9561968	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9584326	0.91[YRI][hapmap]
rs9590313	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900935	chr13:96497070-96631221	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96476000-96502600	Weak transcription	Fetal Heart	heart
2	chr13:96478000-96502600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:96478000-96502600	Weak transcription	Left Ventricle	heart
4	chr13:96478000-96568400	Weak transcription	Placenta	Placenta
5	chr13:96478200-96502200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:96478200-96502600	Weak transcription	Aorta	Aorta
9	chr13:96478200-96502600	Weak transcription	Fetal Stomach	stomach
10	chr13:96478200-96502600	Weak transcription	Gastric	stomach
11	chr13:96478200-96502600	Weak transcription	Ovary	ovary
12	chr13:96486400-96502400	Weak transcription	Osteobl	bone
13	chr13:96486400-96502600	Weak transcription	Hela-S3	cervix
14	chr13:96486400-96502600	Weak transcription	NHLF	lung
15	chr13:96486400-96503000	Weak transcription	NHDF-Ad	bronchial
16	chr13:96486600-96502200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:96486600-96502200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:96486600-96502400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:96486600-96502400	Weak transcription	HMEC	breast
20	chr13:96486600-96502600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr13:96486600-96502600	Weak transcription	NH-A	brain
22	chr13:96487000-96510000	Weak transcription	HUVEC	blood vessel
23	chr13:96490400-96502200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:96491000-96502200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr13:96491600-96500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr13:96492200-96500000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:96493600-96502200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr13:96493800-96502200	Weak transcription	Fetal Muscle Leg	muscle
29	chr13:96493800-96502400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr13:96493800-96502600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr13:96493800-96502600	Weak transcription	Pancreas	Pancrea
32	chr13:96494000-96500200	Weak transcription	HSMM	muscle
33	chr13:96494200-96501200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:96495000-96502200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr13:96495000-96590800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr13:96495800-96502200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr13:96495800-96502400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr13:96495800-96502600	Weak transcription	Adipose Nuclei	Adipose
39	chr13:96496200-96502600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr13:96496800-96502600	Weak transcription	Brain Substantia Nigra	brain
41	chr13:96497400-96500000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr13:96497800-96501200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr13:96498200-96502400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr13:96498400-96502600	Weak transcription	Psoas Muscle	Psoas
45	chr13:96498400-96549800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr13:96498600-96502200	Weak transcription	Liver	Liver
47	chr13:96498600-96502400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:96498600-96502400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr13:96498800-96500000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
50	chr13:96498800-96500800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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