Variant report

Variant	rs9562999
Chromosome Location	chr13:51337696-51337697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2126364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331789	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331957	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7334008	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568465	0.81[AMR][1000 genomes]
rs9568468	0.86[AMR][1000 genomes]
rs9568471	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51331000-51342600	Weak transcription	HepG2	liver
2	chr13:51331800-51338000	Enhancers	Dnd41	blood
3	chr13:51336400-51340800	Enhancers	Primary B cells from peripheral blood	blood
4	chr13:51336600-51338000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:51336600-51339400	Enhancers	Primary B cells from cord blood	blood
6	chr13:51336800-51337800	Enhancers	Brain Cingulate Gyrus	brain
7	chr13:51336800-51337800	Enhancers	Fetal Thymus	thymus
8	chr13:51337000-51337800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:51337000-51338000	Enhancers	Brain Hippocampus Middle	brain
10	chr13:51337000-51338200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr13:51337000-51338200	Enhancers	Brain Substantia Nigra	brain
12	chr13:51337200-51337800	Enhancers	GM12878-XiMat	blood
13	chr13:51337200-51338000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr13:51337200-51338000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:51337200-51338000	Enhancers	Brain Angular Gyrus	brain
16	chr13:51337400-51337800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:51337400-51340200	Weak transcription	Thymus	Thymus
18	chr13:51337600-51338000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr13:51337600-51340200	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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