Variant report

Variant	rs9563015
Chromosome Location	chr13:51642314-51642315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51636070..51637847-chr13:51641416..51643792,2	K562	blood:
2	chr13:51633296..51638107-chr13:51641307..51645101,5	MCF-7	breast:
3	chr13:51632808..51634425-chr13:51641249..51643294,2	K562	blood:
4	chr13:51544110..51545950-chr13:51641591..51643167,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123201	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11148205	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11842080	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12859216	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12865698	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12871332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12877403	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs3790015	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3790017	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3803198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs3803199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3803200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4606607	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71428302	0.85[EUR][1000 genomes]
rs913467	0.88[CHB][hapmap]
rs927992	0.94[CHB][hapmap]
rs9526717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9563017	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9563018	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9563019	0.88[EUR][1000 genomes]
rs9563020	0.86[EUR][1000 genomes]
rs9568502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568504	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568505	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51633400-51657800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51638000-51644600	Enhancers	Fetal Brain Male	brain
3	chr13:51639200-51644000	Weak transcription	Fetal Kidney	kidney
4	chr13:51640000-51644200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:51640200-51644600	Enhancers	Fetal Heart	heart
6	chr13:51641000-51642800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:51641000-51643000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:51641000-51643800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:51641000-51644000	Weak transcription	HSMM	muscle
10	chr13:51641200-51644000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:51641200-51644200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr13:51641400-51643200	Weak transcription	Adipose Nuclei	Adipose
13	chr13:51641400-51643600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:51641400-51644000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr13:51641400-51644000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:51641400-51644000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr13:51641400-51644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr13:51641400-51644000	Weak transcription	Fetal Thymus	thymus
19	chr13:51641400-51644000	Enhancers	Dnd41	blood
20	chr13:51641600-51643000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:51641600-51643600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr13:51641600-51643800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr13:51641600-51644000	Weak transcription	Brain Angular Gyrus	brain
24	chr13:51641600-51644000	Weak transcription	Fetal Muscle Leg	muscle
25	chr13:51641800-51643800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:51641800-51643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:51641800-51643800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:51641800-51644000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr13:51641800-51644000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr13:51641800-51644000	Weak transcription	NH-A	brain
31	chr13:51641800-51645600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr13:51642000-51644600	Enhancers	Fetal Lung	lung
33	chr13:51642200-51642400	Enhancers	Spleen	Spleen
34	chr13:51642200-51642400	Enhancers	HepG2	liver
35	chr13:51642200-51642600	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr13:51642200-51642600	Flanking Active TSS	Fetal Brain Female	brain

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