Variant report

Variant	rs9564061
Chromosome Location	chr13:64055251-64055252
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11148611	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11148612	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11148613	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11148614	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11617393	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11619613	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11619853	0.83[EUR][1000 genomes]
rs11620599	0.83[EUR][1000 genomes]
rs11840887	0.83[EUR][1000 genomes]
rs12427888	0.83[EUR][1000 genomes]
rs12430398	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1333325	0.92[ASN][1000 genomes]
rs17347560	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1855247	1.00[ASN][1000 genomes]
rs2324320	1.00[ASN][1000 genomes]
rs2324321	1.00[ASN][1000 genomes]
rs2324325	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28858812	0.99[ASN][1000 genomes]
rs34445091	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58241826	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs626742	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs779236	1.00[ASN][1000 genomes]
rs900664	1.00[ASN][1000 genomes]
rs900665	1.00[ASN][1000 genomes]
rs902612	1.00[ASN][1000 genomes]
rs9317338	1.00[ASN][1000 genomes]
rs9317339	1.00[ASN][1000 genomes]
rs9317340	1.00[ASN][1000 genomes]
rs9539784	0.92[ASN][1000 genomes]
rs9539788	0.89[ASN][1000 genomes]
rs9539789	0.92[ASN][1000 genomes]
rs9564044	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9564045	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9564046	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9564048	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9564050	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9564052	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9564065	1.00[ASN][1000 genomes]
rs9564066	1.00[ASN][1000 genomes]
rs9564067	1.00[ASN][1000 genomes]
rs9564070	0.95[ASN][1000 genomes]
rs9570857	0.83[EUR][1000 genomes]
rs9570874	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9570875	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570876	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9570877	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570878	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570879	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570881	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9570886	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570887	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570914	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570922	1.00[ASN][1000 genomes]
rs9570923	1.00[ASN][1000 genomes]
rs9570930	0.95[ASN][1000 genomes]
rs9634707	0.83[EUR][1000 genomes]
rs9634902	0.83[EUR][1000 genomes]
rs9634907	0.83[EUR][1000 genomes]
rs977084	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045647	chr13:63545468-64082080	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541799	chr13:63545468-64082080	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv900279	chr13:63831007-64100634	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900285	chr13:63841148-64122619	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900290	chr13:63942220-64184453	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1046067	chr13:63958458-64118191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv541802	chr13:63958458-64118191	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv900297	chr13:63962844-64088820	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv900298	chr13:63962844-64156606	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv900303	chr13:63976723-64088820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv900304	chr13:63976723-64133015	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv900305	chr13:63976723-64149339	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv900306	chr13:63976723-64156606	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv900307	chr13:63976723-64160753	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv900308	chr13:63976723-64184453	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv917273	chr13:63998155-64344377	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv430575	chr13:64017911-64079747	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1041530	chr13:64027587-64073977	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1038853	chr13:64032136-64069999	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv900311	chr13:64037197-64133015	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
24	nsv427934	chr13:64046451-64201882	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv900312	chr13:64050360-64270259	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases
26	nsv900313	chr13:64050360-64279866	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases
27	nsv1043395	chr13:64050684-64180498	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	lncRNA	2 gene(s)	inside rSNPs	diseases
28	nsv541804	chr13:64050684-64180498	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64052800-64055400	Weak transcription	Fetal Lung	lung
2	chr13:64055200-64055800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:64055200-64056000	Enhancers	Adipose Nuclei	Adipose
4	chr13:64055200-64056000	Enhancers	Osteobl	bone
5	chr13:64055200-64056200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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