Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:50698972..50700860-chr13:50941618..50943748,2	MCF-7	breast:
2	chr13:50935553..50937686-chr13:50942423..50944532,2	K562	blood:
3	chr13:50935105..50937686-chr13:50941795..50943923,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1149864	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs1149869	0.83[ASN][1000 genomes]
rs1269265	0.90[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs1269275	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs17074146	0.85[ASN][1000 genomes]
rs1924372	0.84[AFR][1000 genomes]
rs1924373	0.82[AFR][1000 genomes]
rs1924374	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2240810	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2532968	0.87[ASN][1000 genomes]
rs3116625	0.80[AFR][1000 genomes]
rs8000875	0.84[AFR][1000 genomes]
rs806309	0.80[ASN][1000 genomes]
rs9535442	0.85[ASN][1000 genomes]
rs9535444	0.85[ASN][1000 genomes]
rs9562961	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs9562962	0.84[AFR][1000 genomes]
rs9562969	0.81[ASN][1000 genomes]
rs9568394	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs9568395	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs9568397	0.84[AFR][1000 genomes]
rs9568398	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50933400-50944600	Weak transcription	Fetal Lung	lung
2	chr13:50933800-50944000	Weak transcription	Primary B cells from cord blood	blood
3	chr13:50939800-50953400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:50940200-50952600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:50941000-50951200	Weak transcription	HepG2	liver
6	chr13:50941400-50943400	Weak transcription	Fetal Heart	heart
7	chr13:50941400-50943800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr13:50941600-50952400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:50941800-50950200	Weak transcription	Gastric	stomach
10	chr13:50942200-50943000	Enhancers	Psoas Muscle	Psoas

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