Variant report

Variant	rs9568433
Chromosome Location	chr13:51057600-51057601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51057495..51060887-chr13:51065845..51068156,3	K562	blood:
2	chr13:51055961..51057791-chr13:51066613..51068471,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176124	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1028862	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492410	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12428087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12428189	0.82[EUR][1000 genomes]
rs12431131	0.82[EUR][1000 genomes]
rs1327644	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1359860	0.82[EUR][1000 genomes]
rs17074346	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17074358	0.80[EUR][1000 genomes]
rs201767	0.86[ASN][1000 genomes]
rs201768	0.86[ASN][1000 genomes]
rs201777	1.00[CHB][hapmap]
rs201784	0.92[CHB][hapmap]
rs201789	1.00[CHB][hapmap]
rs201807	0.92[CHB][hapmap]
rs2532972	0.84[JPT][hapmap]
rs56023535	0.80[EUR][1000 genomes]
rs56075206	0.80[EUR][1000 genomes]
rs60379059	0.84[EUR][1000 genomes]
rs61962133	0.80[EUR][1000 genomes]
rs61962135	0.80[EUR][1000 genomes]
rs61964386	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67618912	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs719103	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs7334326	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9316495	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316496	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9316497	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9562973	0.80[EUR][1000 genomes]
rs9562974	0.82[EUR][1000 genomes]
rs9562980	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9562981	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9562982	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568404	0.83[CEU][hapmap]
rs9568405	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568406	0.85[CEU][hapmap]
rs9568410	0.80[EUR][1000 genomes]
rs9568412	0.82[EUR][1000 genomes]
rs9568413	0.82[EUR][1000 genomes]
rs9568414	0.82[EUR][1000 genomes]
rs9568415	0.82[EUR][1000 genomes]
rs9568416	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568418	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568419	0.82[EUR][1000 genomes]
rs9568422	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568423	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568424	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568425	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568426	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568427	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568428	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568429	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568430	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568431	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1040	chr13:51041591-51090903	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv526482	chr13:51042258-51065836	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51041800-51060600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:51053000-51058600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:51053400-51058400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:51053400-51060200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:51053600-51058400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:51056400-51060200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:51057200-51058000	Enhancers	Fetal Heart	heart
8	chr13:51057400-51057800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr13:51057400-51058400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:51057600-51058600	Enhancers	Brain Cingulate Gyrus	brain

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