Variant report

Variant	rs9568468
Chromosome Location	chr13:51329980-51329981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1342348	0.90[ASN][1000 genomes]
rs2126364	0.86[AMR][1000 genomes]
rs605294	0.90[ASN][1000 genomes]
rs7331789	0.84[AMR][1000 genomes]
rs7331957	0.84[AMR][1000 genomes]
rs7334008	0.84[AMR][1000 genomes]
rs9562993	0.90[ASN][1000 genomes]
rs9562994	0.91[ASN][1000 genomes]
rs9562995	0.94[ASN][1000 genomes]
rs9562996	0.91[ASN][1000 genomes]
rs9562999	0.86[AMR][1000 genomes]
rs9563000	0.86[AMR][1000 genomes]
rs9568458	1.00[CEU][hapmap]
rs9568459	0.86[ASN][1000 genomes]
rs9568462	0.93[ASN][1000 genomes]
rs9568463	0.93[ASN][1000 genomes]
rs9568464	0.93[ASN][1000 genomes]
rs9568465	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568469	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568470	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568471	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv437786	chr13:51318575-51331550	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51315600-51330400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:51324200-51331800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51329000-51330400	Enhancers	Dnd41	blood
4	chr13:51329200-51331400	Enhancers	Primary B cells from peripheral blood	blood
5	chr13:51329600-51331400	Enhancers	Primary B cells from cord blood	blood
6	chr13:51329800-51330400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr13:51329800-51331200	Enhancers	Thymus	Thymus
8	chr13:51329800-51331400	Enhancers	Fetal Thymus	thymus
9	chr13:51329800-51331800	Enhancers	HUES6 Cell Line	embryonic stem cell

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