Variant report

Variant	rs9568787
Chromosome Location	chr13:53588208-53588209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11618509	0.82[EUR][1000 genomes]
rs11618720	0.83[ASN][1000 genomes]
rs11618738	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1323112	0.82[EUR][1000 genomes]
rs1555559	0.82[EUR][1000 genomes]
rs1578872	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73192464	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7327967	0.81[EUR][1000 genomes]
rs9316600	0.82[EUR][1000 genomes]
rs9316602	0.82[EUR][1000 genomes]
rs9316603	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9527046	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568783	0.81[EUR][1000 genomes]
rs9568784	0.82[EUR][1000 genomes]
rs9568785	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9596733	0.81[AMR][1000 genomes]
rs986338	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53580600-53589000	Weak transcription	Fetal Muscle Leg	muscle
2	chr13:53583000-53590200	Weak transcription	Primary B cells from cord blood	blood
3	chr13:53584600-53589000	Weak transcription	Stomach Mucosa	stomach
4	chr13:53584800-53589000	Weak transcription	Esophagus	oesophagus
5	chr13:53586400-53589000	Weak transcription	Pancreas	Pancrea
6	chr13:53587000-53589000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:53587400-53591200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr13:53587600-53589200	Weak transcription	GM12878-XiMat	blood
9	chr13:53587800-53588800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr13:53587800-53593000	Weak transcription	Gastric	stomach
11	chr13:53588000-53589000	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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