Variant report

Variant	rs957350
Chromosome Location	chr11:35297999-35298000
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35295544..35300568-chr11:35411012..35415613,12	MCF-7	breast:
2	chr11:35296393..35299239-chr11:35321484..35323534,3	MCF-7	breast:
3	chr11:35295515..35301483-chr11:35383053..35389477,19	MCF-7	breast:
4	chr11:35297080..35299545-chr11:35312550..35314552,2	MCF-7	breast:
5	chr11:35296598..35298325-chr11:35342427..35345338,2	MCF-7	breast:
6	chr11:35238261..35241000-chr11:35295906..35298012,2	MCF-7	breast:
7	chr11:35296687..35299158-chr11:35300780..35302460,2	K562	blood:
8	chr11:35295688..35300934-chr11:35309144..35319083,18	MCF-7	breast:
9	chr11:35289687..35293483-chr11:35296744..35298908,3	MCF-7	breast:
10	chr11:35296358..35301253-chr11:35383072..35388147,10	MCF-7	breast:
11	chr11:18548166..18548951-chr11:35297909..35298657,2	Hela-S3	cervix:
12	chr11:35295425..35298898-chr11:35346407..35348803,4	MCF-7	breast:
13	chr11:35296515..35299652-chr11:35423102..35425675,4	MCF-7	breast:
14	chr11:35295369..35301669-chr11:35315160..35319353,7	MCF-7	breast:
15	chr11:35279012..35286392-chr11:35294737..35300890,10	MCF-7	breast:
16	chr11:35296537..35299593-chr11:35342637..35345511,4	MCF-7	breast:
17	chr11:35294659..35299259-chr11:35323739..35329418,10	MCF-7	breast:
18	chr11:35279289..35280837-chr11:35295180..35298029,2	MCF-7	breast:
19	chr11:35297652..35298177-chr11:35387119..35387876,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110436	Chromatin interaction
ENSG00000074319	Chromatin interaction
ENSG00000026508	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1043101	0.83[EUR][1000 genomes]
rs10742339	0.83[EUR][1000 genomes]
rs10742340	0.87[EUR][1000 genomes]
rs10742341	0.87[EUR][1000 genomes]
rs10768118	0.82[EUR][1000 genomes]
rs10768120	0.83[EUR][1000 genomes]
rs10768121	0.83[EUR][1000 genomes]
rs10768122	0.83[EUR][1000 genomes]
rs10768123	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10768126	0.86[EUR][1000 genomes]
rs10836360	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10836361	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10836362	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10836363	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10836364	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10836367	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10836369	0.85[EUR][1000 genomes]
rs11033045	0.83[EUR][1000 genomes]
rs11033046	0.83[EUR][1000 genomes]
rs11033048	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11524863	0.85[EUR][1000 genomes]
rs12361171	0.83[EUR][1000 genomes]
rs12796856	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1570214	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1570215	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17378105	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3088168	0.83[EUR][1000 genomes]
rs35629461	0.83[EUR][1000 genomes]
rs3763888	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3794089	0.84[EUR][1000 genomes]
rs3794090	0.85[EUR][1000 genomes]
rs3794091	0.87[EUR][1000 genomes]
rs3794098	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3794099	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3794100	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3794101	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3794102	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3794103	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3847604	0.84[EUR][1000 genomes]
rs4755394	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4755395	0.87[EUR][1000 genomes]
rs4756203	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4756204	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4756205	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4756206	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6484778	0.87[EUR][1000 genomes]
rs7105505	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7105690	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7121587	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7946149	0.87[EUR][1000 genomes]
rs932633	0.83[EUR][1000 genomes]
rs932635	0.82[EUR][1000 genomes]
rs9633870	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
3	chr11:35283000-35302000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:35284600-35300800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:35285800-35308800	Weak transcription	Gastric	stomach
6	chr11:35295000-35298800	Weak transcription	Esophagus	oesophagus
7	chr11:35295200-35298200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:35295200-35298200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:35295400-35298000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:35295400-35298800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:35295800-35298000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:35295800-35298200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:35296000-35298800	Enhancers	Stomach Mucosa	stomach
14	chr11:35296000-35299000	Enhancers	HMEC	breast
15	chr11:35296000-35299000	Enhancers	NHEK	skin
16	chr11:35296400-35298000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr11:35296400-35298000	Flanking Active TSS	Hela-S3	cervix
18	chr11:35296400-35298200	Enhancers	Brain Substantia Nigra	brain
19	chr11:35296400-35298600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr11:35296400-35299000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:35296600-35298000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr11:35296600-35298200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:35296600-35298200	Enhancers	Aorta	Aorta
24	chr11:35296600-35298400	Enhancers	NHDF-Ad	bronchial
25	chr11:35296600-35298800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:35296600-35298800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:35296600-35298800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:35296600-35298800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:35296600-35299000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:35296600-35301200	Enhancers	Pancreas	Pancrea
31	chr11:35296800-35298200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:35296800-35298400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:35296800-35298400	Enhancers	NHLF	lung
34	chr11:35296800-35298400	Enhancers	Osteobl	bone
35	chr11:35296800-35298600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:35296800-35298600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:35296800-35300400	Weak transcription	Fetal Brain Female	brain
38	chr11:35297000-35298000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:35297000-35298400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:35297000-35299000	Enhancers	Fetal Thymus	thymus
41	chr11:35297200-35299200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:35297200-35302200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:35297400-35298200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:35297400-35298800	Enhancers	Stomach Smooth Muscle	stomach
45	chr11:35297400-35302200	Weak transcription	Adipose Nuclei	Adipose
46	chr11:35297600-35298200	Enhancers	A549	lung
47	chr11:35297600-35298400	Enhancers	Thymus	Thymus
48	chr11:35297600-35298600	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:35297600-35298600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:35297600-35298800	Weak transcription	Brain Cingulate Gyrus	brain

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