Variant report

Variant	rs9573627
Chromosome Location	chr13:76287965-76287966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76279169..76281047-chr13:76286022..76288231,2	MCF-7	breast:
2	chr13:76276163..76278819-chr13:76286604..76288192,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1092601	0.86[ASN][1000 genomes]
rs1323710	0.82[AMR][1000 genomes]
rs1323712	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1408060	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1535730	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1924214	0.86[ASN][1000 genomes]
rs2025354	0.95[ASN][1000 genomes]
rs2328953	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2328956	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2761398	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34545980	0.86[ASN][1000 genomes]
rs480929	0.87[ASN][1000 genomes]
rs4885345	0.86[ASN][1000 genomes]
rs504273	0.88[ASN][1000 genomes]
rs528783	0.83[ASN][1000 genomes]
rs585233	0.86[ASN][1000 genomes]
rs607095	0.86[ASN][1000 genomes]
rs636580	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7324353	0.80[EUR][1000 genomes]
rs7336908	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776527	0.86[ASN][1000 genomes]
rs7986141	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002635	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9544028	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9544029	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9544034	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9544035	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1091	chr13:76282392-76327906	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76259600-76294400	Weak transcription	Ovary	ovary
2	chr13:76279400-76288600	Weak transcription	Psoas Muscle	Psoas
3	chr13:76279400-76308000	Weak transcription	Left Ventricle	heart
4	chr13:76280400-76289800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr13:76280400-76289800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:76280600-76288000	Weak transcription	HSMMtube	muscle
7	chr13:76280800-76289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:76283600-76308000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:76285800-76289000	Genic enhancers	Osteobl	bone
10	chr13:76286000-76289200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:76286200-76289800	Weak transcription	Fetal Heart	heart
12	chr13:76286400-76288000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr13:76286400-76288600	Strong transcription	HSMM	muscle
14	chr13:76286600-76291800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:76286600-76292600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:76287200-76289000	Strong transcription	NHDF-Ad	bronchial
17	chr13:76287400-76288400	Genic enhancers	Muscle Satellite Cultured Cells	--
18	chr13:76287400-76289000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:76287400-76289000	Strong transcription	NH-A	brain
20	chr13:76287600-76289800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:76287800-76288000	Enhancers	NHLF	lung
22	chr13:76287800-76288200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:76287800-76288800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr13:76287800-76289200	Enhancers	Stomach Mucosa	stomach
25	chr13:76287800-76292600	Enhancers	Hela-S3	cervix

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