Variant report

Variant	rs9573631
Chromosome Location	chr13:76293558-76293559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs13378446	0.83[ASN][1000 genomes]
rs13378926	0.83[ASN][1000 genomes]
rs13378927	0.83[ASN][1000 genomes]
rs1570553	0.83[ASN][1000 genomes]
rs1570554	0.83[ASN][1000 genomes]
rs17064886	0.83[ASN][1000 genomes]
rs28634531	0.83[ASN][1000 genomes]
rs4497537	0.83[ASN][1000 genomes]
rs55634270	0.83[ASN][1000 genomes]
rs55912229	0.83[ASN][1000 genomes]
rs56312330	0.83[ASN][1000 genomes]
rs59605282	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225936	0.83[ASN][1000 genomes]
rs73225937	0.83[ASN][1000 genomes]
rs73225945	0.83[ASN][1000 genomes]
rs73225954	0.83[ASN][1000 genomes]
rs73225961	0.83[ASN][1000 genomes]
rs7331067	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7986928	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7991060	0.83[ASN][1000 genomes]
rs8000108	0.83[ASN][1000 genomes]
rs8000374	0.83[ASN][1000 genomes]
rs8000663	0.83[ASN][1000 genomes]
rs9318366	0.83[ASN][1000 genomes]
rs9318367	0.83[ASN][1000 genomes]
rs9318369	0.83[ASN][1000 genomes]
rs9318370	0.83[ASN][1000 genomes]
rs9318371	0.83[ASN][1000 genomes]
rs9544031	0.83[ASN][1000 genomes]
rs9565182	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9565183	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9565184	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9565185	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9565187	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9565190	0.83[ASN][1000 genomes]
rs9573598	1.00[EUR][1000 genomes]
rs9573600	1.00[EUR][1000 genomes]
rs9573602	1.00[EUR][1000 genomes]
rs9573604	1.00[EUR][1000 genomes]
rs9573613	0.83[ASN][1000 genomes]
rs9573615	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9573616	0.83[ASN][1000 genomes]
rs9573617	0.83[ASN][1000 genomes]
rs9573619	0.83[ASN][1000 genomes]
rs9573620	0.83[ASN][1000 genomes]
rs9573621	0.83[ASN][1000 genomes]
rs9573622	0.83[ASN][1000 genomes]
rs9573623	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9573624	0.83[ASN][1000 genomes]
rs9573625	0.83[ASN][1000 genomes]
rs9573626	0.83[ASN][1000 genomes]
rs9573628	0.83[ASN][1000 genomes]
rs9573629	0.83[ASN][1000 genomes]
rs9573630	0.83[ASN][1000 genomes]
rs9573650	1.00[EUR][1000 genomes]
rs9573653	1.00[EUR][1000 genomes]
rs9593119	0.83[ASN][1000 genomes]
rs9593122	0.83[ASN][1000 genomes]
rs9600530	0.83[ASN][1000 genomes]
rs9600531	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1091	chr13:76282392-76327906	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76259600-76294400	Weak transcription	Ovary	ovary
2	chr13:76279400-76308000	Weak transcription	Left Ventricle	heart
3	chr13:76283600-76308000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:76288200-76297800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:76289200-76294600	Weak transcription	Stomach Mucosa	stomach
6	chr13:76290600-76293600	Weak transcription	NHLF	lung
7	chr13:76290600-76293800	Weak transcription	HSMMtube	muscle
8	chr13:76290600-76298000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr13:76290600-76298200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:76290600-76298200	Weak transcription	Aorta	Aorta
11	chr13:76290600-76298400	Weak transcription	Fetal Lung	lung
12	chr13:76290800-76299000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:76291600-76298000	Strong transcription	HSMM	muscle
14	chr13:76291800-76297200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:76292000-76294400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:76292400-76294800	Strong transcription	NH-A	brain
17	chr13:76292400-76297200	Strong transcription	Osteobl	bone
18	chr13:76292600-76293800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:76292600-76297000	Weak transcription	Hela-S3	cervix
20	chr13:76292800-76294800	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr13:76292800-76297800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:76293400-76293600	Strong transcription	NHDF-Ad	bronchial
23	chr13:76293400-76295000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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