Variant report

Variant	rs9573646
Chromosome Location	chr13:76307642-76307643
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs9565191	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9565192	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9573614	0.81[ASN][1000 genomes]
rs9573632	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9573633	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9573634	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9573635	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9573652	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1091	chr13:76282392-76327906	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76279400-76308000	Weak transcription	Left Ventricle	heart
2	chr13:76283600-76308000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:76294800-76321800	Weak transcription	NH-A	brain
4	chr13:76298600-76309200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:76298600-76313000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:76298600-76318800	Weak transcription	Gastric	stomach
7	chr13:76299200-76307800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr13:76299200-76308000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:76299400-76307800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:76299600-76310400	Weak transcription	NHLF	lung
11	chr13:76299800-76313000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:76300200-76309200	Weak transcription	NHDF-Ad	bronchial
13	chr13:76300200-76313000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:76301200-76310400	Weak transcription	HSMMtube	muscle
15	chr13:76301400-76307800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:76301400-76307800	Weak transcription	HSMM	muscle
17	chr13:76301400-76307800	Weak transcription	Osteobl	bone
18	chr13:76301400-76308000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:76301400-76310800	Weak transcription	Fetal Kidney	kidney
20	chr13:76304600-76310800	Weak transcription	Fetal Intestine Large	intestine
21	chr13:76306200-76330600	Weak transcription	Thymus	Thymus
22	chr13:76306400-76310200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:76307200-76318200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:76307600-76308200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr13:76307600-76308200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:76307600-76308200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr13:76307600-76308200	Enhancers	HepG2	liver
28	chr13:76307600-76308400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
29	chr13:76307600-76308400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
30	chr13:76307600-76308400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
31	chr13:76307600-76310200	Strong transcription	Muscle Satellite Cultured Cells	--

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