Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76444149..76445101-chr13:76593232..76594146,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1074098	0.86[EUR][1000 genomes]
rs1119198	0.88[EUR][1000 genomes]
rs11618070	0.85[ASN][1000 genomes]
rs11619151	0.89[EUR][1000 genomes]
rs1461986	0.93[EUR][1000 genomes]
rs1576532	0.87[EUR][1000 genomes]
rs28605869	0.82[AFR][1000 genomes]
rs4427681	0.93[EUR][1000 genomes]
rs715894	0.90[EUR][1000 genomes]
rs715895	0.90[EUR][1000 genomes]
rs7330847	0.89[EUR][1000 genomes]
rs7335951	0.87[ASN][1000 genomes]
rs7983891	0.82[EUR][1000 genomes]
rs7985763	0.83[EUR][1000 genomes]
rs7993854	0.87[CHB][hapmap]
rs7997251	0.93[EUR][1000 genomes]
rs9318391	0.89[EUR][1000 genomes]
rs9318392	0.89[EUR][1000 genomes]
rs9530505	0.87[ASN][1000 genomes]
rs9565222	0.82[EUR][1000 genomes]
rs9573727	0.87[EUR][1000 genomes]
rs9573735	0.88[EUR][1000 genomes]
rs9573745	0.87[EUR][1000 genomes]
rs9600629	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9600634	0.89[EUR][1000 genomes]
rs9600635	0.84[EUR][1000 genomes]
rs9635003	0.89[EUR][1000 genomes]
rs972435	0.87[ASN][1000 genomes]
rs972436	0.87[ASN][1000 genomes]
rs972437	0.87[ASN][1000 genomes]
rs997416	0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76589400-76601400	Weak transcription	K562	blood
2	chr13:76589800-76594800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:76589800-76594800	Weak transcription	HMEC	breast
4	chr13:76589800-76596800	Weak transcription	Fetal Lung	lung
5	chr13:76593200-76595200	Enhancers	Brain Hippocampus Middle	brain
6	chr13:76593200-76595200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr13:76593400-76595200	Enhancers	Brain Angular Gyrus	brain
8	chr13:76593600-76594400	Active TSS	HepG2	liver
9	chr13:76593600-76595200	Enhancers	Brain Substantia Nigra	brain
10	chr13:76593800-76594200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr13:76593800-76594200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:76593800-76594200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr13:76593800-76594200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:76593800-76594200	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr13:76593800-76594200	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr13:76593800-76594200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:76593800-76594400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:76593800-76594400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:76594000-76594200	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr13:76594000-76594400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr13:76594000-76594400	Enhancers	Placenta Amnion	Placenta Amnion

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