Variant report

Variant	rs9573726
Chromosome Location	chr13:76618974-76618975
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1074098	0.80[ASN][1000 genomes]
rs1119198	0.86[ASN][1000 genomes]
rs11618070	0.90[EUR][1000 genomes]
rs11619151	0.86[ASN][1000 genomes]
rs1461986	0.86[ASN][1000 genomes]
rs1576532	0.86[ASN][1000 genomes]
rs4427681	0.86[ASN][1000 genomes]
rs715894	0.86[ASN][1000 genomes]
rs715895	0.86[ASN][1000 genomes]
rs7330847	0.86[ASN][1000 genomes]
rs7335951	0.81[EUR][1000 genomes]
rs7983891	0.86[ASN][1000 genomes]
rs7985763	0.86[ASN][1000 genomes]
rs7997251	0.86[ASN][1000 genomes]
rs9318391	0.86[ASN][1000 genomes]
rs9318392	0.86[ASN][1000 genomes]
rs9530505	0.90[EUR][1000 genomes]
rs9565222	0.86[ASN][1000 genomes]
rs9573727	0.86[ASN][1000 genomes]
rs9573735	0.86[ASN][1000 genomes]
rs9573745	0.84[ASN][1000 genomes]
rs9600634	0.86[ASN][1000 genomes]
rs9600635	0.86[ASN][1000 genomes]
rs9635003	0.86[ASN][1000 genomes]
rs972435	0.81[EUR][1000 genomes]
rs972436	0.81[EUR][1000 genomes]
rs972437	0.81[EUR][1000 genomes]
rs997416	0.88[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv516991	chr13:76610127-76634901	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv455988	chr13:76610561-76662923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv562363	chr13:76610561-76662923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9573726	C13orf34	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76618200-76621000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:76618200-76623000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:76618400-76622800	Weak transcription	Fetal Lung	lung
4	chr13:76618400-76623000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:76618400-76623000	Weak transcription	Brain Angular Gyrus	brain
6	chr13:76618400-76623000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:76618400-76623000	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:76618400-76623000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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