Variant report

Variant	rs9584316
Chromosome Location	chr13:96327254-96327255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:96327079-96330590	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96324907..96328412-chr13:96405169..96408703,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DZIP1-1	chr13:96325124-96329183	NONHSAT034769

Variant related genes	Relation type
DNAJC3	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17885047	1.00[EUR][1000 genomes]
rs3101572	1.00[EUR][1000 genomes]
rs3125432	1.00[EUR][1000 genomes]
rs3125437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58594962	1.00[EUR][1000 genomes]
rs7992808	1.00[EUR][1000 genomes]
rs8000598	1.00[EUR][1000 genomes]
rs9525075	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9525076	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584319	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96323000-96328400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:96323200-96328200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:96323400-96328000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:96323600-96327600	Weak transcription	Fetal Heart	heart
5	chr13:96324000-96328200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:96324200-96328000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:96324400-96327600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:96324400-96328000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:96324400-96328200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr13:96324400-96328200	Weak transcription	Aorta	Aorta
11	chr13:96324400-96328400	Weak transcription	Esophagus	oesophagus
12	chr13:96324400-96328400	Weak transcription	Lung	lung
13	chr13:96324600-96327600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr13:96324600-96327600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:96324600-96327600	Weak transcription	Fetal Intestine Small	intestine
16	chr13:96324600-96327600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr13:96324600-96327600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr13:96324600-96327600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr13:96324600-96327800	Weak transcription	Fetal Lung	lung
20	chr13:96324600-96328200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr13:96325600-96327400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr13:96325600-96327600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr13:96325600-96327800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr13:96325600-96332400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:96326000-96327600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:96326000-96327800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr13:96326200-96327600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr13:96326200-96327600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:96326200-96327600	Enhancers	Dnd41	blood
30	chr13:96326400-96327400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr13:96326400-96327600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr13:96326400-96328000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr13:96326600-96327800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr13:96326600-96327800	Enhancers	HUVEC	blood vessel
35	chr13:96326800-96327400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr13:96326800-96327400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:96326800-96327600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr13:96326800-96327600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr13:96326800-96327600	Enhancers	Hela-S3	cervix
40	chr13:96326800-96327800	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr13:96326800-96328000	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr13:96326800-96328000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr13:96326800-96328000	Enhancers	Brain Anterior Caudate	brain
44	chr13:96326800-96328200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr13:96326800-96328200	Enhancers	Brain Angular Gyrus	brain
46	chr13:96326800-96328400	Weak transcription	Gastric	stomach
47	chr13:96327000-96327400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr13:96327000-96327600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr13:96327000-96327600	Enhancers	Liver	Liver
50	chr13:96327000-96327600	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links