Variant report

Variant	rs958608
Chromosome Location	chr6:81317603-81317604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1584900	0.96[AFR][1000 genomes]
rs2444802	0.90[AFR][1000 genomes]
rs2444804	0.93[AFR][1000 genomes]
rs2444829	0.93[AFR][1000 genomes]
rs2444834	0.93[AFR][1000 genomes]
rs2496686	0.88[AFR][1000 genomes]
rs2496688	0.88[AFR][1000 genomes]
rs2503745	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv508417	chr6:81290516-81330590	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1015520	chr6:81309213-81374699	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81314800-81317800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:81314800-81321000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:81315200-81317800	Weak transcription	Hela-S3	cervix
4	chr6:81316800-81317800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:81316800-81318600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:81317000-81317800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:81317000-81317800	Enhancers	Osteobl	bone
8	chr6:81317000-81318400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:81317000-81318400	Enhancers	Adipose Nuclei	Adipose
10	chr6:81317000-81318600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:81317000-81318800	Enhancers	NHLF	lung
12	chr6:81317000-81319000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:81317000-81319000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:81317000-81321000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:81317000-81321000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:81317000-81321000	Enhancers	HMEC	breast
17	chr6:81317000-81321000	Enhancers	HSMM	muscle
18	chr6:81317000-81321200	Enhancers	NHDF-Ad	bronchial
19	chr6:81317200-81318400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:81317200-81319000	Enhancers	Colon Smooth Muscle	Colon
21	chr6:81317400-81317800	Enhancers	HSMMtube	muscle
22	chr6:81317400-81318000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:81317400-81318200	Enhancers	Liver	Liver
24	chr6:81317400-81318200	Enhancers	Fetal Heart	heart
25	chr6:81317400-81318800	Enhancers	Rectal Smooth Muscle	rectum
26	chr6:81317400-81319000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:81317400-81319200	Enhancers	NHEK	skin
28	chr6:81317600-81318000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:81317600-81318000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:81317600-81318400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:81317600-81318400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:81317600-81318600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:81317600-81319200	Enhancers	NH-A	brain

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