Variant report

Variant	rs9588005
Chromosome Location	chr13:110489906-110489907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1023305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1023306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184672	1.00[EUR][1000 genomes]
rs1335612	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1335613	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317716	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7331580	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7332843	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358854	0.89[AFR][1000 genomes]
rs7358932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7982658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7983073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7986269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7986378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7986897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7989371	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7990525	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8002388	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9301413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9587996	1.00[EUR][1000 genomes]
rs9587999	1.00[EUR][1000 genomes]
rs9588000	1.00[EUR][1000 genomes]
rs9588001	1.00[AMR][1000 genomes]
rs9588002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588007	1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110488400-110490000	Enhancers	Fetal Intestine Small	intestine
2	chr13:110488400-110496200	Weak transcription	Aorta	Aorta
3	chr13:110489000-110490000	Enhancers	HSMM	muscle
4	chr13:110489200-110490000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:110489200-110490000	Enhancers	Fetal Kidney	kidney
6	chr13:110489600-110490800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:110489600-110492600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:110489600-110497200	Weak transcription	Stomach Mucosa	stomach
9	chr13:110489800-110491600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:110489800-110492000	Weak transcription	Dnd41	blood
11	chr13:110489800-110492600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:110489800-110492600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr13:110489800-110492600	Weak transcription	Pancreas	Pancrea
14	chr13:110489800-110492800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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