Variant report

Variant	rs958887
Chromosome Location	chr4:86832650-86832651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1016510	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1027942	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11097082	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13121761	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1467072	0.94[ASN][1000 genomes]
rs1473009	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1473011	0.94[ASN][1000 genomes]
rs1510582	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17011166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17011172	0.94[ASN][1000 genomes]
rs1848917	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs186969	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1961436	0.95[ASN][1000 genomes]
rs28566811	0.94[ASN][1000 genomes]
rs28572751	0.94[ASN][1000 genomes]
rs2904082	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2904083	0.95[ASN][1000 genomes]
rs2904084	0.89[EUR][1000 genomes]
rs346509	1.00[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs346510	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs346513	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs346516	1.00[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs346517	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs346520	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs346521	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4348086	0.84[YRI][hapmap]
rs61561733	0.91[ASN][1000 genomes]
rs6531876	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6531882	0.94[ASN][1000 genomes]
rs6819930	0.91[ASN][1000 genomes]
rs6820175	0.91[ASN][1000 genomes]
rs6850630	0.92[ASN][1000 genomes]
rs6851522	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7663884	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7664621	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7666429	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7669712	0.95[ASN][1000 genomes]
rs7685851	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7690939	0.91[ASN][1000 genomes]
rs7699391	0.92[ASN][1000 genomes]
rs9790515	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
4	chr4:86815800-86842800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:86826800-86845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:86827400-86834200	Weak transcription	Stomach Mucosa	stomach
7	chr4:86827600-86835400	Weak transcription	Small Intestine	intestine
8	chr4:86827600-86850600	Weak transcription	Spleen	Spleen
9	chr4:86828800-86834000	Weak transcription	Fetal Intestine Large	intestine
10	chr4:86828800-86834200	Weak transcription	Fetal Intestine Small	intestine
11	chr4:86829600-86843800	Weak transcription	Primary B cells from cord blood	blood
12	chr4:86830800-86834400	Weak transcription	Fetal Kidney	kidney
13	chr4:86831200-86851000	Weak transcription	Aorta	Aorta
14	chr4:86831400-86833000	Weak transcription	Esophagus	oesophagus
15	chr4:86831600-86834800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:86832000-86833000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:86832400-86842800	Weak transcription	Pancreas	Pancrea
18	chr4:86832400-86843800	Weak transcription	Primary B cells from peripheral blood	blood

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