Variant report
| Variant | rs959 |
|---|---|
| Chromosome Location | chr1:71318261-71318262 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11209704 | 0.87[ASN][1000 genomes] |
| rs11209710 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12141856 | 0.89[CHB][hapmap] |
| rs1325949 | 0.95[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1409166 | 0.83[ASN][1000 genomes] |
| rs1409978 | 0.95[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes] |
| rs17131474 | 0.91[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes] |
| rs1854150 | 0.86[AMR][1000 genomes] |
| rs35897531 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35980659 | 0.89[AMR][1000 genomes] |
| rs55947353 | 0.90[AMR][1000 genomes] |
| rs55958766 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs5702 | 0.91[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6664305 | 0.84[CEU][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap] |
| rs72669128 | 0.90[AMR][1000 genomes] |
| rs7530738 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7539357 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7543182 | 0.95[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes] |
| rs7555485 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7555865 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7555874 | 0.89[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1845198 | chr1:71274759-71514969 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv830148 | chr1:71310366-71483932 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
