Variant report

Variant	rs9590313
Chromosome Location	chr13:96339469-96339470
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11619004	0.84[AFR][1000 genomes]
rs2389372	1.00[YRI][hapmap]
rs3087339	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3125431	0.88[YRI][hapmap]
rs3213931	0.80[CHB][hapmap]
rs3848074	0.95[YRI][hapmap]
rs3848078	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6492817	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs6492819	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7327549	0.83[AFR][1000 genomes]
rs7995045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7995306	0.95[YRI][hapmap]
rs9302086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9561932	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9561935	0.95[YRI][hapmap]
rs9561948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561951	1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9561965	0.84[CHB][hapmap]
rs9590316	0.85[AFR][1000 genomes]
rs9590318	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs9590321	1.00[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96330200-96340800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:96330600-96340800	Weak transcription	Spleen	Spleen
3	chr13:96331400-96350600	Weak transcription	Aorta	Aorta
4	chr13:96331400-96362200	Weak transcription	HSMM	muscle
5	chr13:96331800-96339600	Weak transcription	Thymus	Thymus
6	chr13:96332000-96348000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:96332400-96340800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr13:96332400-96360400	Weak transcription	NHDF-Ad	bronchial
9	chr13:96332600-96350200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr13:96334000-96340600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr13:96334400-96341000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr13:96334600-96340800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr13:96334600-96341000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr13:96334800-96339600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:96334800-96344400	Weak transcription	Colon Smooth Muscle	Colon
16	chr13:96335400-96340800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr13:96336000-96340400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr13:96337400-96340800	Weak transcription	Right Atrium	heart
19	chr13:96337400-96341200	Weak transcription	Liver	Liver
20	chr13:96337400-96346400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr13:96337400-96347600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr13:96337400-96350400	Weak transcription	Lung	lung
23	chr13:96337600-96340800	Weak transcription	Left Ventricle	heart
24	chr13:96337600-96340800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr13:96337600-96341800	Weak transcription	Gastric	stomach
26	chr13:96337600-96346200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr13:96337600-96347200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:96337600-96347800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr13:96337600-96348400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr13:96337600-96350400	Weak transcription	Pancreas	Pancrea
31	chr13:96337600-96350400	Weak transcription	Right Ventricle	heart
32	chr13:96337600-96350400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr13:96337600-96350400	Weak transcription	Small Intestine	intestine
34	chr13:96337600-96356000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr13:96337600-96358800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr13:96337600-96360800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr13:96337600-96362200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr13:96337600-96364200	Weak transcription	Ovary	ovary
39	chr13:96338000-96341200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr13:96339400-96341600	Weak transcription	HepG2	liver

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