Variant report

Variant	rs9590320
Chromosome Location	chr13:96386933-96386934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10467347	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17235320	0.89[ASW][hapmap];0.88[YRI][hapmap]
rs17878797	1.00[ASN][1000 genomes]
rs17879366	0.93[ASN][1000 genomes]
rs17880519	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs28503176	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28631067	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28895285	0.81[AFR][1000 genomes]
rs3125431	0.85[CHB][hapmap]
rs4406928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4550324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58186081	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58377734	0.83[AMR][1000 genomes]
rs61975190	0.96[ASN][1000 genomes]
rs61975193	1.00[ASN][1000 genomes]
rs6492817	0.85[CHB][hapmap]
rs7318647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7324577	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73554913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983920	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7988464	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7993991	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7994177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9584318	1.00[ASN][1000 genomes]
rs9584321	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9584330	0.81[AFR][1000 genomes]
rs9590318	0.85[CHB][hapmap]
rs9590319	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9590322	0.88[ASN][1000 genomes]
rs9590323	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9590329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9590331	0.85[CHB][hapmap]
rs9590335	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9590337	1.00[EUR][1000 genomes]
rs9590338	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9590340	0.82[AFR][1000 genomes]
rs9590341	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96356600-96393600	Weak transcription	Right Ventricle	heart
2	chr13:96361000-96393600	Weak transcription	Spleen	Spleen
3	chr13:96362800-96393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:96366400-96415800	Weak transcription	HSMMtube	muscle
5	chr13:96367600-96436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:96367800-96430200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:96369200-96393600	Weak transcription	Pancreas	Pancrea
8	chr13:96369200-96393800	Weak transcription	Esophagus	oesophagus
9	chr13:96369400-96393600	Weak transcription	Gastric	stomach
10	chr13:96374600-96387200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr13:96376000-96393600	Weak transcription	Left Ventricle	heart
12	chr13:96376200-96393600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:96378000-96393400	Weak transcription	HSMM	muscle
14	chr13:96381600-96387000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:96382000-96387000	ZNF genes & repeats	GM12878-XiMat	blood
16	chr13:96384400-96387000	ZNF genes & repeats	Dnd41	blood
17	chr13:96384400-96387400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:96384400-96393800	Weak transcription	Fetal Stomach	stomach
19	chr13:96384600-96387000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr13:96385400-96387000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
21	chr13:96385400-96387000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:96385400-96387000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr13:96385600-96387000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr13:96385800-96387000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
25	chr13:96385800-96387000	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr13:96386000-96387000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
27	chr13:96386200-96387000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:96386200-96387000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr13:96386200-96387000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr13:96386200-96387000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:96386200-96387000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
32	chr13:96386200-96387000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
33	chr13:96386400-96387000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:96386400-96387000	ZNF genes & repeats	Liver	Liver
35	chr13:96386400-96387000	ZNF genes & repeats	Osteobl	bone
36	chr13:96386400-96387200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr13:96386600-96393800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr13:96386800-96387200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr13:96386800-96393200	Weak transcription	A549	lung
40	chr13:96386800-96393400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr13:96386800-96397600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr13:96386800-96415200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr13:96386800-96415600	Weak transcription	Primary hematopoietic stem cells	blood

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