Variant report

Variant	rs9590323
Chromosome Location	chr13:96418278-96418279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10467347	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17878797	1.00[ASN][1000 genomes]
rs17879366	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28503176	0.84[ASN][1000 genomes]
rs28631067	0.82[ASN][1000 genomes]
rs4406928	0.82[ASN][1000 genomes]
rs4550324	0.84[ASN][1000 genomes]
rs56804437	0.81[EUR][1000 genomes]
rs61975190	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61975193	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318647	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7324577	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73554913	1.00[ASN][1000 genomes]
rs7983920	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7988464	0.82[ASN][1000 genomes]
rs7993991	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994177	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584318	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584321	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590319	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9590320	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9590322	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9590329	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9590335	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9590338	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96367600-96436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr13:96367800-96430200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:96387000-96428800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr13:96394000-96435800	Weak transcription	A549	lung
5	chr13:96394400-96438400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr13:96394600-96435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:96394800-96420600	Weak transcription	Esophagus	oesophagus
8	chr13:96398200-96424400	Weak transcription	NHDF-Ad	bronchial
9	chr13:96398400-96436200	Weak transcription	Colon Smooth Muscle	Colon
10	chr13:96398400-96439400	Weak transcription	Brain Hippocampus Middle	brain
11	chr13:96403200-96421800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr13:96404000-96433200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:96404000-96439400	Weak transcription	Thymus	Thymus
14	chr13:96405400-96436800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr13:96405400-96439400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr13:96405400-96452600	Weak transcription	Psoas Muscle	Psoas
17	chr13:96405600-96455800	Weak transcription	Fetal Heart	heart
18	chr13:96406600-96435800	Weak transcription	Gastric	stomach
19	chr13:96406600-96436000	Weak transcription	NHLF	lung
20	chr13:96406800-96435800	Weak transcription	Pancreas	Pancrea
21	chr13:96407000-96433400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:96407200-96439400	Weak transcription	Brain Anterior Caudate	brain
23	chr13:96408400-96443600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr13:96408600-96430200	Weak transcription	Hela-S3	cervix
25	chr13:96408600-96443200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr13:96408600-96445400	Weak transcription	K562	blood
27	chr13:96408800-96425200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr13:96409600-96421000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:96409600-96424200	Strong transcription	Liver	Liver
30	chr13:96409600-96424400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr13:96409800-96434200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr13:96410400-96436200	Weak transcription	Aorta	Aorta
33	chr13:96411000-96421000	Weak transcription	Fetal Intestine Small	intestine
34	chr13:96411400-96424200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:96411400-96439400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:96412000-96419200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:96412000-96443400	Weak transcription	Colonic Mucosa	Colon
38	chr13:96412200-96418600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr13:96412200-96423400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:96412200-96424000	Strong transcription	Primary T cells from cord blood	blood
41	chr13:96412400-96419600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr13:96412400-96420400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr13:96412800-96418800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr13:96412800-96419800	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr13:96412800-96422000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr13:96413000-96419800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr13:96413200-96424400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr13:96413200-96439800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr13:96414000-96419200	Weak transcription	Fetal Lung	lung
50	chr13:96414000-96432400	Weak transcription	Ovary	ovary

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