Variant report

Variant	rs9590331
Chromosome Location	chr13:96460070-96460071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96451195..96454586-chr13:96458825..96461447,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs3125431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4383020	0.84[EUR][1000 genomes]
rs4409947	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4550324	0.85[CHB][hapmap]
rs475882	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs565851	0.85[CHB][hapmap]
rs6492817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6492822	0.89[EUR][1000 genomes]
rs7321625	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7324577	0.85[CHB][hapmap]
rs7993991	0.85[CHB][hapmap]
rs7994177	0.85[CHB][hapmap]
rs9516625	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs9561936	0.82[YRI][hapmap]
rs9590316	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9590318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9590320	0.85[CHB][hapmap]
rs9590321	0.89[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9590328	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv983616	chr13:96455936-96461697	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96443800-96465600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96443800-96466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:96444400-96461600	Weak transcription	Esophagus	oesophagus
4	chr13:96444400-96461800	Weak transcription	Ovary	ovary
5	chr13:96444400-96477600	Weak transcription	Brain Angular Gyrus	brain
6	chr13:96444400-96477600	Weak transcription	NHLF	lung
7	chr13:96444400-96485600	Weak transcription	NHDF-Ad	bronchial
8	chr13:96445600-96461600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr13:96445600-96461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:96445600-96461800	Weak transcription	Pancreas	Pancrea
11	chr13:96445600-96477400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:96445800-96461600	Weak transcription	Aorta	Aorta
13	chr13:96445800-96490000	Weak transcription	HepG2	liver
14	chr13:96446200-96461600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:96446200-96461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:96446200-96477400	Weak transcription	Gastric	stomach
17	chr13:96446400-96464800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr13:96446400-96466000	Weak transcription	NHEK	skin
19	chr13:96446800-96477400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:96446800-96477400	Weak transcription	HSMMtube	muscle
21	chr13:96447000-96461600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:96447200-96477400	Weak transcription	Osteobl	bone
23	chr13:96449000-96462400	Weak transcription	Hela-S3	cervix
24	chr13:96449000-96464800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:96450200-96461600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney
27	chr13:96452800-96466000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr13:96453000-96461800	Weak transcription	Fetal Stomach	stomach
29	chr13:96455000-96467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr13:96456000-96461600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:96457800-96461600	Weak transcription	HSMM	muscle
32	chr13:96458800-96462200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr13:96458800-96477400	Weak transcription	NH-A	brain
34	chr13:96459200-96460400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:96459800-96462200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:96459800-96462400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr13:96460000-96460400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:96460000-96462200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links