Variant report

Variant	rs9591342
Chromosome Location	chr13:51179680-51179681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55735210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56071165	1.00[EUR][1000 genomes]
rs57622309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59628841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60219042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487899	1.00[EUR][1000 genomes]
rs73490019	1.00[EUR][1000 genomes]
rs7992787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995277	1.00[EUR][1000 genomes]
rs7996975	1.00[EUR][1000 genomes]
rs9591344	1.00[EUR][1000 genomes]
rs9596316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596318	1.00[ASN][1000 genomes]
rs9596323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51174400-51182600	Weak transcription	Fetal Thymus	thymus
2	chr13:51178800-51181200	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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