Variant report

Variant	rs9591350
Chromosome Location	chr13:51322719-51322720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10467383	0.87[AFR][1000 genomes]
rs11841196	1.00[CHB][hapmap]
rs1323887	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17074908	1.00[ASN][1000 genomes]
rs17350448	1.00[ASN][1000 genomes]
rs2476617	1.00[ASN][1000 genomes]
rs2476619	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2476624	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2497094	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73492049	1.00[ASN][1000 genomes]
rs74081116	1.00[ASN][1000 genomes]
rs74081118	1.00[ASN][1000 genomes]
rs7984960	1.00[ASN][1000 genomes]
rs7989422	1.00[ASN][1000 genomes]
rs7989430	1.00[ASN][1000 genomes]
rs7990412	0.83[AFR][1000 genomes]
rs7990423	1.00[ASN][1000 genomes]
rs7996529	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9596342	1.00[ASN][1000 genomes]
rs9596343	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv437786	chr13:51318575-51331550	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51315600-51330400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:51320800-51323000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:51321600-51323000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:51322000-51322800	Enhancers	Fetal Muscle Leg	muscle
5	chr13:51322400-51322800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links