Variant report

Variant	rs9600581
Chromosome Location	chr13:76461929-76461930
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1015694	0.96[ASN][1000 genomes]
rs1036867	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1036868	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507835	0.87[ASN][1000 genomes]
rs1323565	0.81[ASN][1000 genomes]
rs1323566	0.81[ASN][1000 genomes]
rs1323567	0.83[ASN][1000 genomes]
rs1323568	0.88[ASN][1000 genomes]
rs1397	0.84[ASN][1000 genomes]
rs1399	0.84[ASN][1000 genomes]
rs1400	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2120066	0.81[ASN][1000 genomes]
rs35986631	0.89[ASN][1000 genomes]
rs4329801	0.83[ASN][1000 genomes]
rs4418941	0.81[ASN][1000 genomes]
rs4508318	0.83[ASN][1000 genomes]
rs4572275	0.83[ASN][1000 genomes]
rs4598784	0.83[ASN][1000 genomes]
rs4884024	0.96[ASN][1000 genomes]
rs4885359	0.84[ASN][1000 genomes]
rs4885360	0.84[ASN][1000 genomes]
rs4885361	0.84[ASN][1000 genomes]
rs4885362	1.00[ASN][1000 genomes]
rs6562923	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7981821	0.99[ASN][1000 genomes]
rs7986419	0.97[ASN][1000 genomes]
rs7987971	0.83[ASN][1000 genomes]
rs7995080	0.84[ASN][1000 genomes]
rs9318381	0.83[ASN][1000 genomes]
rs9530477	0.83[ASN][1000 genomes]
rs9530479	0.83[ASN][1000 genomes]
rs9530481	0.84[ASN][1000 genomes]
rs9530483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9530484	1.00[ASN][1000 genomes]
rs9544060	0.96[ASN][1000 genomes]
rs9544069	0.84[ASN][1000 genomes]
rs9544071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9593137	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9600572	0.98[ASN][1000 genomes]
rs9600574	0.99[ASN][1000 genomes]
rs9600575	0.99[ASN][1000 genomes]
rs9600577	0.99[ASN][1000 genomes]
rs9600578	0.83[ASN][1000 genomes]
rs9600579	0.83[ASN][1000 genomes]
rs9600582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969394	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76440000-76469200	Weak transcription	HSMM	muscle
2	chr13:76451800-76463600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:76461600-76462600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:76461600-76462600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:76461600-76464400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:76461600-76466400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:76461800-76462600	Enhancers	HUES64 Cell Line	embryonic stem cell

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