Variant report

Variant	rs960431
Chromosome Location	chr14:72386949-72386950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11621415	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12433726	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2238284	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs2332699	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36332	0.91[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs36340	0.87[ASN][1000 genomes]
rs36341	0.89[ASN][1000 genomes]
rs36344	0.88[ASN][1000 genomes]
rs36345	0.88[ASN][1000 genomes]
rs36350	0.89[ASN][1000 genomes]
rs36360	0.91[ASN][1000 genomes]
rs36361	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs36363	0.89[ASN][1000 genomes]
rs4899405	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7152936	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7152951	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1345	chr14:72349589-72395819	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs960431	ACOT4	cis	cerebellum	SCAN
rs960431	DLST	cis	cerebellum	SCAN
rs960431	PTGR2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72386000-72390200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:72386200-72396800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links