Variant report

Variant	rs9630329
Chromosome Location	chr13:111328563-111328564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12100172	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12385854	0.85[AFR][1000 genomes]
rs28649796	0.85[AFR][1000 genomes]
rs74125030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125031	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125032	1.00[AMR][1000 genomes]
rs9588233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588238	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044234	chr13:111143053-111370580	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
2	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
3	nsv1053922	chr13:111167764-111330876	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1043849	chr13:111167764-111340418	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv541924	chr13:111167764-111340418	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1036160	chr13:111167764-111347308	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv541925	chr13:111167764-111347308	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv901012	chr13:111220842-111340342	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv1044340	chr13:111234073-111692994	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
10	nsv1048700	chr13:111265350-111658617	Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
11	nsv1042232	chr13:111282123-111348475	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv901013	chr13:111291192-111340342	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv901014	chr13:111302922-111380684	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	197 gene(s)	inside rSNPs	diseases
14	esv1819597	chr13:111319754-111343888	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv1824622	chr13:111319754-111343888	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111280800-111328600	Weak transcription	Psoas Muscle	Psoas
2	chr13:111297800-111336400	Weak transcription	Small Intestine	intestine
3	chr13:111302200-111351400	Weak transcription	Stomach Mucosa	stomach
4	chr13:111310800-111352200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:111311600-111352000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:111312800-111357400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:111316200-111330600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr13:111316600-111332800	Weak transcription	K562	blood
9	chr13:111319400-111328600	Weak transcription	Brain Substantia Nigra	brain
10	chr13:111319400-111337600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr13:111319800-111348400	Weak transcription	Fetal Brain Male	brain
12	chr13:111319800-111354600	Weak transcription	Fetal Heart	heart
13	chr13:111320200-111339200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:111320600-111328600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr13:111321800-111328600	Weak transcription	HSMM	muscle
16	chr13:111321800-111328800	Weak transcription	Hela-S3	cervix
17	chr13:111321800-111332800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr13:111322000-111330000	Weak transcription	NHDF-Ad	bronchial
19	chr13:111322400-111328600	Weak transcription	HSMMtube	muscle
20	chr13:111322800-111328600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr13:111322800-111333800	Weak transcription	Fetal Kidney	kidney
22	chr13:111322800-111349600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr13:111323000-111328600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr13:111324200-111328600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:111326800-111328600	Enhancers	Primary B cells from cord blood	blood
26	chr13:111327600-111329600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:111327800-111328600	Enhancers	Primary B cells from peripheral blood	blood
28	chr13:111327800-111329400	Strong transcription	Placenta Amnion	Placenta Amnion
29	chr13:111327800-111331400	Strong transcription	Colonic Mucosa	Colon
30	chr13:111327800-111336000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:111327800-111344200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:111327800-111347400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr13:111327800-111355000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr13:111328000-111328600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr13:111328000-111328600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:111328000-111328600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:111328000-111328600	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr13:111328000-111328600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr13:111328000-111328600	Strong transcription	Placenta	Placenta
40	chr13:111328000-111328600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr13:111328000-111328800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr13:111328000-111328800	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr13:111328000-111328800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr13:111328000-111328800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr13:111328000-111328800	ZNF genes & repeats	Esophagus	oesophagus
46	chr13:111328000-111328800	ZNF genes & repeats	Fetal Thymus	thymus
47	chr13:111328000-111329000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
48	chr13:111328000-111329000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr13:111328000-111329000	ZNF genes & repeats	Fetal Stomach	stomach
50	chr13:111328000-111329200	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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