Variant report

Variant	rs9631719
Chromosome Location	chr4:79518847-79518848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79494956..79497942-chr4:79518671..79521873,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10004883	1.00[AMR][1000 genomes]
rs10010111	1.00[AMR][1000 genomes]
rs11939119	1.00[AMR][1000 genomes]
rs13434871	1.00[AMR][1000 genomes]
rs28552884	1.00[AMR][1000 genomes]
rs28840375	1.00[AMR][1000 genomes]
rs28893007	1.00[AMR][1000 genomes]
rs6811289	1.00[AMR][1000 genomes]
rs9307406	1.00[AMR][1000 genomes]
rs9307407	1.00[AMR][1000 genomes]
rs9307408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993108	1.00[AMR][1000 genomes]
rs9996290	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv967949	chr4:79511515-79527707	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79474400-79527200	Weak transcription	Spleen	Spleen
2	chr4:79481800-79521000	Weak transcription	Right Ventricle	heart
3	chr4:79483000-79530000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:79488400-79523600	Weak transcription	Esophagus	oesophagus
5	chr4:79488400-79527400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:79490000-79523400	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:79490600-79521000	Weak transcription	Fetal Heart	heart
8	chr4:79490800-79532600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:79491000-79529600	Weak transcription	Aorta	Aorta
10	chr4:79491200-79535400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:79491800-79533200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:79491800-79542600	Weak transcription	NH-A	brain
13	chr4:79492000-79531600	Strong transcription	HMEC	breast
14	chr4:79500000-79522200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:79502200-79529200	Weak transcription	Colonic Mucosa	Colon
16	chr4:79502400-79525800	Weak transcription	Psoas Muscle	Psoas
17	chr4:79502400-79532200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:79503200-79521800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr4:79506800-79523800	Weak transcription	Placenta	Placenta
20	chr4:79507600-79521000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:79508200-79533600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:79508600-79523600	Weak transcription	Adipose Nuclei	Adipose
23	chr4:79508800-79525400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr4:79508800-79527000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:79508800-79527400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:79510000-79520600	Weak transcription	Lung	lung
27	chr4:79510800-79520800	Weak transcription	Left Ventricle	heart
28	chr4:79510800-79523400	Weak transcription	A549	lung
29	chr4:79511000-79523800	Weak transcription	Hela-S3	cervix
30	chr4:79512400-79523600	Weak transcription	Gastric	stomach
31	chr4:79512400-79524400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:79512600-79534200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:79512600-79536800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:79512800-79525600	Weak transcription	NHLF	lung
35	chr4:79513600-79521000	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr4:79513800-79521000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:79513800-79534200	Strong transcription	NHEK	skin
38	chr4:79516000-79525400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:79517200-79519600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr4:79517200-79534800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr4:79517600-79519200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr4:79517600-79519600	Weak transcription	K562	blood
43	chr4:79517600-79520800	Weak transcription	Pancreas	Pancrea
44	chr4:79517600-79523600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr4:79517800-79524000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:79518000-79522400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr4:79518000-79548000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr4:79518200-79521000	Weak transcription	HUVEC	blood vessel
49	chr4:79518200-79524200	Strong transcription	Fetal Stomach	stomach
50	chr4:79518400-79528200	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links