Variant report

Variant	rs963280
Chromosome Location	chr7:138287863-138287864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10232737	0.89[ASN][1000 genomes]
rs10265131	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11764864	0.89[ASN][1000 genomes]
rs12667717	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1659825	0.86[CHB][hapmap]
rs1659826	0.94[ASN][1000 genomes]
rs1659827	0.92[ASN][1000 genomes]
rs1659829	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1673214	0.83[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1673218	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs57072133	0.94[ASN][1000 genomes]
rs62485281	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs963279	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138284200-138293000	Weak transcription	Fetal Kidney	kidney
2	chr7:138285000-138292800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:138286200-138289200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:138286200-138290000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:138286600-138288600	Enhancers	HepG2	liver
6	chr7:138286800-138289200	Enhancers	Fetal Intestine Large	intestine
7	chr7:138287200-138289000	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:138287200-138289200	Enhancers	Fetal Intestine Small	intestine
9	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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