Variant report

Variant	rs9635250
Chromosome Location	chr14:65799348-65799349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65797557..65800177-chr14:65876391..65878682,2	MCF-7	breast:
2	chr14:65794502..65796026-chr14:65798643..65801165,2	MCF-7	breast:
3	chr14:65799114..65802639-chr14:65877920..65880470,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10131385	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10132229	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10135194	0.85[CEU][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10138151	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10144503	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145534	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10147958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10150168	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12431963	0.83[JPT][hapmap]
rs12433207	0.83[AMR][1000 genomes]
rs12436299	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28557275	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28595734	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59233694	0.81[AMR][1000 genomes]
rs7143109	0.81[JPT][hapmap]
rs73278053	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010759	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs899961	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65788400-65800600	Weak transcription	Thymus	Thymus
2	chr14:65789000-65800600	Weak transcription	Primary T cells from cord blood	blood
3	chr14:65790800-65799400	Weak transcription	Stomach Mucosa	stomach
4	chr14:65795400-65804600	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:65796000-65807200	Enhancers	Placenta	Placenta
6	chr14:65796800-65800600	Weak transcription	Fetal Thymus	thymus
7	chr14:65796800-65800800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:65796800-65800800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:65797000-65799400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr14:65797000-65801200	Weak transcription	Spleen	Spleen
11	chr14:65797400-65800800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:65797400-65800800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr14:65797800-65800600	Weak transcription	Gastric	stomach
14	chr14:65797800-65800800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:65798000-65803000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:65798200-65800600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:65798400-65802600	Enhancers	Primary hematopoietic stem cells	blood
18	chr14:65798400-65803400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr14:65798600-65801200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr14:65798600-65802400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:65798800-65799600	Enhancers	Colonic Mucosa	Colon
22	chr14:65798800-65800000	Enhancers	HUVEC	blood vessel
23	chr14:65798800-65800200	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr14:65798800-65802200	Enhancers	Small Intestine	intestine
25	chr14:65798800-65802600	Enhancers	Primary B cells from cord blood	blood
26	chr14:65798800-65803000	Enhancers	GM12878-XiMat	blood
27	chr14:65799000-65799600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr14:65799000-65799600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:65799000-65799800	Enhancers	HMEC	breast
30	chr14:65799000-65800200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:65799000-65800800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:65799000-65800800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:65799000-65800800	Enhancers	NHLF	lung
34	chr14:65799000-65801200	Enhancers	NHDF-Ad	bronchial
35	chr14:65799000-65802200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:65799000-65803400	Enhancers	Adipose Nuclei	Adipose
37	chr14:65799200-65799400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr14:65799200-65799800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:65799200-65800400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:65799200-65800400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr14:65799200-65803400	Enhancers	NHEK	skin
42	chr14:65799200-65805400	Enhancers	Fetal Intestine Large	intestine

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