Variant report

Variant	rs963593
Chromosome Location	chr8:9973371-9973372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9963502..9966052-chr8:9972558..9974638,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10098474	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs10104911	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10107485	0.81[CHB][hapmap]
rs1160369	0.86[CHB][hapmap]
rs11774411	0.82[CHB][hapmap]
rs11783851	0.82[CHB][hapmap]
rs11785434	0.81[CHB][hapmap]
rs11990610	0.95[CHB][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs11990614	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs11998591	0.80[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.86[ASN][1000 genomes]
rs12114195	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12115063	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12549943	0.83[CHB][hapmap]
rs12550244	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs13256357	0.82[CHB][hapmap]
rs1484638	0.91[ASN][1000 genomes]
rs1564808	0.85[CHB][hapmap]
rs17149332	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.90[ASN][1000 genomes]
rs17151108	0.84[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17151140	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17151145	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17151147	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17151188	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17151193	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs1994223	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1994224	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs2046398	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs28653100	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2898242	0.87[CHB][hapmap]
rs4294187	0.91[CHB][hapmap]
rs4840461	0.85[CEU][hapmap]
rs4840463	0.95[CHB][hapmap]
rs4840464	0.80[CEU][hapmap];0.86[CHB][hapmap]
rs4841279	0.87[CHB][hapmap]
rs4841280	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs57105322	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58764043	0.82[ASN][1000 genomes]
rs62488697	0.86[ASN][1000 genomes]
rs62488698	0.83[ASN][1000 genomes]
rs62488709	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62488714	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6601417	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs685218	0.87[CHB][hapmap]
rs6985791	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs6988046	0.85[CHB][hapmap]
rs7008407	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs7008695	0.85[ASN][1000 genomes]
rs7012601	0.80[ASN][1000 genomes]
rs7016690	0.80[ASN][1000 genomes]
rs7843906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs814421	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs814422	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs814424	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs860068	0.86[CHB][hapmap]
rs9329214	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs9329215	0.87[CHB][hapmap]
rs936749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9644681	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9959800-9974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:9966000-9975800	Weak transcription	Right Atrium	heart
3	chr8:9967200-9975800	Weak transcription	Fetal Brain Male	brain
4	chr8:9967200-9977400	Weak transcription	Fetal Brain Female	brain
5	chr8:9970600-9995800	Weak transcription	Pancreas	Pancrea
6	chr8:9973200-9976800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links