Variant report

Variant	rs963637
Chromosome Location	chr12:39677177-39677178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11172144	1.00[JPT][hapmap]
rs11172162	1.00[JPT][hapmap]
rs12228013	1.00[JPT][hapmap]
rs1512941	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1512943	0.88[ASN][1000 genomes]
rs17126997	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17127029	0.81[ASN][1000 genomes]
rs17127070	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17127094	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs17127100	0.81[ASN][1000 genomes]
rs17127129	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17127138	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2137495	0.88[ASN][1000 genomes]
rs2271478	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2292491	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4620763	0.91[ASN][1000 genomes]
rs57196300	0.81[ASN][1000 genomes]
rs58891998	0.84[ASN][1000 genomes]
rs59967849	0.81[ASN][1000 genomes]
rs61039034	0.84[ASN][1000 genomes]
rs7135918	0.81[ASN][1000 genomes]
rs7307730	0.91[ASN][1000 genomes]
rs7308138	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs73086885	0.81[ASN][1000 genomes]
rs7956823	0.86[ASN][1000 genomes]
rs7966841	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7970819	0.81[ASN][1000 genomes]
rs7976275	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7978854	0.81[ASN][1000 genomes]
rs7980595	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7980857	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899013	chr12:39567945-39732430	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv832375	chr12:39599362-39784722	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv832376	chr12:39633080-39808277	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv470286	chr12:39651893-39729700	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv558589	chr12:39667861-39768356	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39674800-39690200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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