Variant report

Variant	rs963689
Chromosome Location	chr5:98335916-98335917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98263100..98265682-chr5:98335904..98338137,3	K562	blood:
2	chr5:98334839..98337187-chr5:98340371..98342752,2	K562	blood:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1007453	0.90[AFR][1000 genomes]
rs10515285	0.88[AFR][1000 genomes]
rs17166461	0.86[AFR][1000 genomes]
rs17166471	0.90[AFR][1000 genomes]
rs17166564	0.84[AFR][1000 genomes]
rs3860806	0.86[AFR][1000 genomes]
rs55654090	0.96[AFR][1000 genomes]
rs57249217	0.90[AFR][1000 genomes]
rs57253975	0.96[AFR][1000 genomes]
rs58477983	0.88[AFR][1000 genomes]
rs60298381	0.88[AFR][1000 genomes]
rs61515191	0.96[AFR][1000 genomes]
rs6864720	0.84[AFR][1000 genomes]
rs731496	0.90[AFR][1000 genomes]
rs73153600	0.84[AFR][1000 genomes]
rs73155434	0.86[AFR][1000 genomes]
rs73155446	0.90[AFR][1000 genomes]
rs73155478	0.96[AFR][1000 genomes]
rs73155484	0.94[AFR][1000 genomes]
rs73155486	0.85[AFR][1000 genomes]
rs73157407	0.96[AFR][1000 genomes]
rs73157426	0.92[AFR][1000 genomes]
rs73776061	0.90[AFR][1000 genomes]
rs7732611	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1791809	chr5:98333129-98346305	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv1797550	chr5:98333129-98346514	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv1847033	chr5:98333129-98346514	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98331800-98336800	Weak transcription	Stomach Mucosa	stomach
2	chr5:98333400-98336200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:98333800-98336600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:98335200-98336200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:98335400-98337800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:98335600-98336200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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