Variant report

Variant	rs9638772
Chromosome Location	chr7:19967964-19967965
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10486375	0.97[ASN][1000 genomes]
rs13237702	0.87[ASN][1000 genomes]
rs17142193	0.97[ASN][1000 genomes]
rs17142207	0.91[ASN][1000 genomes]
rs17142213	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17142232	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142240	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2390244	1.00[CEU][hapmap]
rs73682238	0.96[ASN][1000 genomes]
rs9639341	0.91[ASN][1000 genomes]
rs9639342	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9639343	0.94[ASN][1000 genomes]
rs9639345	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv1847477	chr7:19778086-19970584	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv887826	chr7:19816240-20033899	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1844137	chr7:19862221-19970584	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
7	nsv1027445	chr7:19947297-20211733	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv971168	chr7:19961685-19968294	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19954800-19973000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:19956400-19988000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:19960000-19983000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:19960800-19972400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:19960800-19982800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:19960800-19993200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:19965000-19985600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:19967400-19968200	Enhancers	A549	lung
9	chr7:19967400-19968600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:19967400-19968800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr7:19967600-19968200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:19967600-19968400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:19967800-19968200	Enhancers	HMEC	breast
14	chr7:19967800-19968400	Flanking Active TSS	GM12878-XiMat	blood
15	chr7:19967800-19969000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:19967800-19969000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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