Variant report

Variant	rs9639811
Chromosome Location	chr7:39191307-39191308
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10234092	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs10242528	0.96[CEU][hapmap]
rs10252129	0.96[CEU][hapmap]
rs10951595	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10951596	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10951597	0.96[CEU][hapmap]
rs11767080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11773046	0.96[CEU][hapmap]
rs11972468	0.93[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs12701695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12701698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12701699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1525793	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs1525800	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17511572	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2049496	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs2091323	0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2280668	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2392619	0.94[ASN][1000 genomes]
rs4720311	0.96[CEU][hapmap]
rs4723823	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs4723827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6462894	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs6956307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6979829	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7788521	0.96[CEU][hapmap]
rs955591	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887968	chr7:39123165-39198960	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2761126	chr7:39191290-39199053	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9639811	Y_RNA	cis	lung	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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