Variant report

Variant	rs9643499
Chromosome Location	chr8:58351810-58351811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10086018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10086935	0.90[ASN][1000 genomes]
rs10101274	0.90[ASN][1000 genomes]
rs10112629	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11990437	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12156322	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1316350	0.91[ASN][1000 genomes]
rs13271121	0.82[ASN][1000 genomes]
rs16922131	0.88[ASN][1000 genomes]
rs16922170	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17332173	0.87[ASN][1000 genomes]
rs17819759	0.94[ASN][1000 genomes]
rs34246249	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34515816	0.97[ASN][1000 genomes]
rs34781696	0.93[ASN][1000 genomes]
rs34896551	0.96[ASN][1000 genomes]
rs35060274	0.91[ASN][1000 genomes]
rs35195028	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35530875	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35714499	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36029122	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36037881	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56198564	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56280635	0.85[ASN][1000 genomes]
rs62514797	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471603	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471604	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471605	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980937	0.99[ASN][1000 genomes]
rs6988870	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6991061	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6991253	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995173	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7011998	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7816166	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7827772	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844365	0.88[ASN][1000 genomes]
rs7845730	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9643360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1029189	chr8:58336604-58409288	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv6208	chr8:58345211-58389888	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases
9	nsv437623	chr8:58349767-58376503	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
10	esv2538211	chr8:58351319-58353444	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
11	esv3405556	chr8:58351423-58353971	Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
12	esv3440656	chr8:58351498-58354146	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
13	nsv824652	chr8:58351753-58352791	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58350400-58352400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr8:58351000-58352200	Enhancers	Liver	Liver
3	chr8:58351800-58353000	Weak transcription	Primary monocytes fromperipheralblood	blood

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