Variant report

Variant	rs9649742
Chromosome Location	chr7:48653327-48653328
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10268266	0.80[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1358409	0.80[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1527842	0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1918583	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3915483	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4551288	0.80[JPT][hapmap]
rs4917024	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55652646	0.91[ASN][1000 genomes]
rs7809663	0.95[CEU][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv3432166	chr7:48652660-48655083	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv993578	chr7:48652945-48654841	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48635800-48672200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48650200-48672200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:48652200-48654800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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