Variant report

Variant	rs9652023
Chromosome Location	chr12:67773554-67773555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11176632	1.00[AMR][1000 genomes]
rs11176648	1.00[AMR][1000 genomes]
rs11176649	1.00[AMR][1000 genomes]
rs12301230	1.00[AMR][1000 genomes]
rs12301290	1.00[AMR][1000 genomes]
rs12301392	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12301453	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302524	1.00[AMR][1000 genomes]
rs12305775	1.00[AMR][1000 genomes]
rs12312066	1.00[AMR][1000 genomes]
rs12312713	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12315232	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12319094	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12322809	1.00[AMR][1000 genomes]
rs13377685	1.00[AMR][1000 genomes]
rs1731770	1.00[AMR][1000 genomes]
rs17854617	1.00[AMR][1000 genomes]
rs2700056	1.00[AMR][1000 genomes]
rs2700061	1.00[AMR][1000 genomes]
rs2700063	1.00[AMR][1000 genomes]
rs28545106	1.00[AMR][1000 genomes]
rs28677001	1.00[AMR][1000 genomes]
rs35314758	1.00[AMR][1000 genomes]
rs6581762	1.00[AMR][1000 genomes]
rs7298233	1.00[AMR][1000 genomes]
rs7956219	1.00[AMR][1000 genomes]
rs7967952	1.00[AMR][1000 genomes]
rs7970098	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7976779	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67762000-67780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:67771200-67774200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:67771600-67774600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:67771600-67775200	Weak transcription	HSMMtube	muscle
5	chr12:67771600-67782400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:67771800-67775600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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